BAC Information

Click to search

BAC

Clone NameMSMg01-345C01
Chromosome13 (Build37)
Map Location 56,314,109 - 56,314,658
singlet/doubletsinglet
Overlap genenone
Upstream geneNsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057
Downstream geneNeurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7, LOC100040995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345C01.T7 (MSMg01no345_c01.b1)MSMg01-345C01.TJ (MSMg01no345_c01.g1)
ACCAG458024AG458025
length868732
length of high quality
(start - end)		---558 (70 - 627)
definitionCHROMAT_FILE: MSMg01no345_c01.b1 PHD_FILE: MSMg01no345_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:31 2005CHROMAT_FILE: MSMg01no345_c01.g1 PHD_FILE: MSMg01no345_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAAAGTTAATAGACCCATATCCATAACGCACTGCAGCTCCCCCGCCTCC
CACCTCCCCTCCCGCCTCCCACCCCAGCCCCATCATGCACCATTCCTCCA
ACTATTACCGAACCTCAAAACTTGAAACCGCTGCTGAACTTCCGATGACG
AGAGACCCATCACCCCCCCTCTCTCCAACTACCTTCCAAATCCCCTACCG
AGTGACCCTCACCTTCACCTCCCCACCTCACCCCTCTCATTAAACTTCGA
ACTAACACGCATCTCCACTCAATGACTTTGGCCCCGCACCNAAAAAAGAC
ACTACACATCCACTTGAAACTATAAAACATTTCAAACCAAAACCTCACCC
TAGCCTTCCCCCAAATATTTTTNNAAACACTCACCCCCTGTGACACAACG
ACNAGGGCGCAGAACATATACAAAAAAACATGAGATAGCCCTTCGCCGCT
TATTACCNNNNNNNNNAAGGTAATAAAGTNANAGAAGAGTAGTAGGNGNC
TCCNNNNNNAGANNNNGNNNACTTTACCNNGGCCCCTAGAGAGAAGGGAT
AGGAAAGAAGANAGGGTTTTCCNNNNCTTTGATAAATCCCTTTGGAGGGN
TCGGTAGAGGAANNNCAANTNAAAANTATATNATAAAAAAGGGNAAAGNN
NANNAAGTNNNNAGAGTTTGCCGGNNNGGCGCGGCTGCGTGAGAATAAAA
ATAACAATAANGGTGCACACAGAAAGANATAAGCAGNNTTTTGGTTGTAA
TGCGGTCNGNCTGGNAAGCTAGGTGGTGCCAGNAGNGGGGGTGNAAAANG
GNNNANGGTNAANNNNNTTNNNNNCATGGNNNNNNGNNATNNTGTTTCTT
TGNTTTCCNGNNTAGTNC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCATCCTTACATCAGTCTCACATTTCTGTAA
TGAGATCTGATGTCCTCTTCTGGTGTGCATGAAGACAAAGCACTCATATA
CACAAACAAACAAACAAACAAACAAACAAAAAACAAGCAAGCAAATAAGA
ATCATGGCCTCTCTGCTTCATGAGACCCATAGGACCAAGTTTCCCCCATC
CCTAGTCTGTGCCTTTCTCACATCATCTAAGCTGGTGGTACTACTCCAAT
GGCAGGGTGAAAGAAGAGACTAAGACAAGGCAGAGAGCAGGCTATAGTTC
TTTGAAGGGTTTTCTGGAAGTAACTACAAGTAGCAGTTTATACTGCTACT
TTGTTTATAAAGCACTGGTCAGAACAGAGCCACAATAGAGACCCGACAAT
GTAGCTCTTCTCTTGACAATTTACCCAGCTAGAAATTCGGCTACTTTTAG
AGAGGAGATAACCAGAGGCCTCTGCCATAGACATGTAACACACTAACACA
AGGTGGTGATGGTAATGGGGGACTCTCCTAGAGGATACGGCATCCTAGAA
GTGTTGTGGATGGTGGCAGTGGTTTCATGGGCAGTTTGTTGTTGTTTGTT
TTGAGACAGGGTCTCACTGTGTAACTATGACTGACTGGCCCTGGAGCTTA
CTGTGCAAACCAGGGTGGTTGGCCCTCAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_c01.g1 MSMg01no345_c01.g1 CHROMAT_FILE:
MSMg01no345_c01.g1 PHD_FILE: MSMg01no345_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:31 2005
         (558 letters)



>mm_chr13_56313901_56314858
          Length = 958

 Score = 1036 bits (536), Expect = 0.0
 Identities = 549/558 (98%), Gaps = 8/558 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatccttacatcagtctcacatttctgtaatgagatctgatgtcctcttctggtgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcatccttacatcagtctcacatttctgtaatgagatctgatgtcctcttctggtgtgca 268

                                                                       
Query: 61  tgaagacaaagcactcatatacacaaacaaacaaacaaacaaacaaacaaaaaacaagca 120
           |||||||||||||||||||||||||||||||||||||||||||        |||||||||
Sbjct: 269 tgaagacaaagcactcatatacacaaacaaacaaacaaacaaa--------aaacaagca 320

                                                                       
Query: 121 agcaaataagaatcatggcctctctgcttcatgagacccataggaccaagtttcccccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaaataagaatcatggcctctctgcttcatgagacccataggaccaagtttcccccat 380

                                                                       
Query: 181 ccctagtctgtgcctttctcacatcatctaagctggtggtactactccaatggcagggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctagtctgtgcctttctcacatcatctaagctggtggtactactccaatggcagggtg 440

                                                                       
Query: 241 aaagaagagactaagacaaggcagagagcaggctatagttctttgaagggttttctggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaagagactaagacaaggcagagagcaggctatagttctttgaagggttttctggaa 500

                                                                       
Query: 301 gtaactacaagtagcagtttatactgctactttgtttataaagcactggtcagaacagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaactacaagtagcagtttatactgctactttgtttataaagcactggtcagaacagag 560

                                                                       
Query: 361 ccacaatagagacccgacaatgtagctcttctcttgacaatttacccagctagaaattcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacaatagagacccgacaatgtagctcttctcttgacaatttacccagctagaaattcg 620

                                                                       
Query: 421 gctacttttagagaggagataaccagaggcctctgccatagacatgtaacacactaacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctacttttagagaggagataaccagaggcctctgccatagacatgtaacacactaacac 680

                                                                       
Query: 481 aaggtggtgatggtaatgggggactctcctagaggatacggcatcctagaagtgttgtgg 540
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 aaggtggtgatggtaatgggggactctcctggaggatacggcatcctagaagtgttgtgg 740

                             
Query: 541 atggtggcagtggtttca 558
           ||||||||||||||||||
Sbjct: 741 atggtggcagtggtttca 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |