BAC Information

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BAC

Clone NameMSMg01-345E20
Chromosome13 (Build37)
Map Location 71,897,221 - 72,041,283
singlet/doubletdoublet
Overlap genenone
Upstream geneAdamts16, 8030423J24Rik, LOC627230, LOC100042360
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345E20.T7 (MSMg01no345_e20.b1)MSMg01-345E20.TJ (MSMg01no345_e20.g1)
ACCAG458157AG458158
length778776
length of high quality
(start - end)		490 (55 - 544)432 (85 - 516)
definitionCHROMAT_FILE: MSMg01no345_e20.b1 PHD_FILE: MSMg01no345_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:43 2005CHROMAT_FILE: MSMg01no345_e20.g1 PHD_FILE: MSMg01no345_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,897,221 - 71,897,706)(72,041,014 - 72,041,283)
sequence
NNNNNNNNTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGCCCTGGTCGTCTGGCAGAGCAATATATACTTTTA
TTTGCTGGACCACTTTTCCAGACATTTATTTATTTTGTATGTGTGTGCAG
TGAATGTATTCGAACAGTTGTCTCCTGTTAGGTTTCAAACCTGGGACAAA
TGGTTGAGGTACCTATTTAACATATCAAAGTGGATTCCAGCCACTAGATT
CTCCCATCATCCTTCAACCCCTACCTGTTACAAAATCCTTCTGCTGGTAT
AGCCTGCCTTCTACCCTGAACTCTTCAGCACAGGGGGCTGGGATGGCTTT
CCCCATATAATCCCACCATTTGACTACCTGCTTTTTTGGACTTTTGTTCT
CTTGGCTGTTACACCTTGTTCCCTCTCTTCCTCTCATTTACACAATGCCC
AACTCAGCCTGCTCATGCCCATGCTGGACTCTCCCAGATGTCCCTTCCTC
TGACTATGCTCTCTCAGGTGTCCCTTCCGCTGGCTCTGCTCTTTCACATA
TCTGCAATACACTTTCTCTTCTACCACACCTAAAAGCACTCANNTTCATT
CTTCTTTATTTTTTTTTCATTCCCTCACCAGCAAATCTCAGGAAATTTTC
CTGTTTCCCCCAAACCCCCCAAAATTGTGAATGAAAAAAANGGCCTTGTG
AAAGGAACCTCCCCATTTTCCCCCTAAAAAAGGGGGATTTTACACACTGG
AGCCTTTCCCTCCCAAAGGGGGGTTTTT

NAAATTATCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGTGGTGGGAAG
GCAAGTGACTCCCTTGACTCTGTCTTTAACAAGCACACTCACATCTTGAG
GCCAGAATGCTTTTCTGCAGCTCTTCTGTACTGTATCCACATTGCCCTTG
GACCCATGTGGCTCCATCCCTCCCTGGTTCATGGCTTCATATACACATTG
AATAGATTCTTTACCTGTGTCCTTTCCTCCTCAGCCTTTATCTGGGAGAG
ATTGGGTAGTGAAGGCAGCATTATTAATTTCTGGTTTCTCATTTAAATTC
TTTTATGTGTATTCAGAAGAGATCTCAGGTCCTACATAGACAGCTGTCAT
CCACTGGGTATGTTTTTGTGACACCGAAGGTCATTTGTATCCTTTTAAAT
GCATCTTTTTAAAAATATGCATGATTTGGACCCAGTGTATGTGGGGGTAC
TATTTGCTTATTTTGACATGGAACTACTGAAATCTTTAACCAGACTTAAC
AGGTCCCTGGAAGCTCTTCTTGAAAATCACAATCCTCTAACCATCCCTAA
GGGCCTGAATTTAAAGCCAAGGATAAAAATTTCTCCGGAGGAAAAGTGAA
AACATCGTAATGGCCCGAAAATGTTTTGTTCCCCCCACCGTTCTTAATTG
TTATTTGACTAAAAAACTTCCCTTGTAAACCAACAAACAAATGCTTCGGT
ATTCTTNCATATAAATTTCAACTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_e20.b1 MSMg01no345_e20.b1 CHROMAT_FILE:
MSMg01no345_e20.b1 PHD_FILE: MSMg01no345_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:43 2005
         (490 letters)



>mm_chr13_71897018_71897907
          Length = 890

 Score =  886 bits (458), Expect = 0.0
 Identities = 479/486 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagccctggtcgtctggcagagcaatatatacttttatttgctggaccactttt 63
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcagccctggtcgtctggcagagcaatatatacttttatctgctggaccactttt 263

                                                                       
Query: 64  ccagacatttatttattttgtatgtgtgtgcagtgaatgtattcgaacagttgtctcctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 ccagacatttatttattttgtatgtgtgtgcagtgaatgtattcgaatagttgtctcctg 323

                                                                       
Query: 124 ttaggtttcaaacctgggacaaatggttgaggtacctatttaacatatcaaagtggattc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaggtttcaaacctgggacaaatggttgaggtacctatttaacatatcaaagtggattc 383

                                                                       
Query: 184 cagccactagattctcccatcatccttcaacccctacctgttacaaaatccttctgctgg 243
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 384 cagccactagattctcccatcatccttcaacccctacctattacaacatccttctgctgg 443

                                                                       
Query: 244 tatagcctgccttctaccctgaactcttcagcacagggggctgggatggctttccccata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatagcctgccttctaccctgaactcttcagcacagggggctgggatggctttccccata 503

                                                                       
Query: 304 taatcccaccatttgactacctgcttttttggacttttgttctcttggctgttacacctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 taatcccaccatttgactacctgcttttttggacttttgttctcttggctgctacacctt 563

                                                                       
Query: 364 gttccctctcttcctctcatttacacaatgcccaactcagcctgctcatgcccatgctgg 423
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 gttccctctcttcctctcatttacacaaggcccaactcagcctgctcatgcccatgctgg 623

                                                                       
Query: 424 actctcccagatgtcccttcctctgactatgctctctcaggtgtcccttccgctggctct 483
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 624 actctcccagatgtcccttcctctgactatggtctctcaggtgtcccttccgctggctct 683

                 
Query: 484 gctctt 489
           ||||||
Sbjct: 684 gctctt 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_e20.g1 MSMg01no345_e20.g1 CHROMAT_FILE:
MSMg01no345_e20.g1 PHD_FILE: MSMg01no345_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:44 2005
         (432 letters)



>mm_chr13_72040652_72041483
          Length = 832

 Score =  514 bits (266), Expect = e-150
 Identities = 269/270 (99%)
 Strand = Plus / Minus

                                                                       
Query: 163 attgaatagattctttacctgtgtcctttcctcctcagcctttatctgggagagattggg 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 attgaatagattctttacctgtgtcctttcctcctcagcctttatctgggagagattggg 573

                                                                       
Query: 223 tagtgaaggcagcattattaatttctggtttctcatttaaattcttttatgtgtattcag 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tagtgaaggcagcattattaatttctggtttctcatttaaattcttttatgtgtattcag 513

                                                                       
Query: 283 aagagatctcaggtcctacatagacagctgtcatccactgggtatgtttttgtgacaccg 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aagagatctcaggtcctacatagacagctgtcatccactgggtatgtttttgtgacaccg 453

                                                                       
Query: 343 aaggtcatttgtatccttttaaatgcatctttttaaaaatatgcatgatttggacccagt 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 452 aaggtcatttgtatccttttaaatgcatctttttaaaaatatgcatgatttggacacagt 393

                                         
Query: 403 gtatgtgggggtactatttgcttattttga 432
           ||||||||||||||||||||||||||||||
Sbjct: 392 gtatgtgggggtactatttgcttattttga 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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