BAC Information

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BAC

Clone NameMSMg01-345F12
Chromosome13 (Build37)
Map Location 80,835,926 - 80,836,228
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345F12.T7 (MSMg01no345_f12.b1)MSMg01-345F12.TJ (MSMg01no345_f12.g1)
ACCAG458189AG458190
length754717
length of high quality
(start - end)		492 (58 - 549)303 (93 - 395)
definitionCHROMAT_FILE: MSMg01no345_f12.b1 PHD_FILE: MSMg01no345_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:47 2005CHROMAT_FILE: MSMg01no345_f12.g1 PHD_FILE: MSMg01no345_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTTCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGG
GTTGTTCGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGG
ATATTAGCCCACTATCTGATTTAGGACAGGTAAAGATCCTTTCCCAATCT
CTTGGTGGTCTTTTTGTCTTGTTGACGGTGTCTTTTGCCTTGCAGAAACT
TTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACATG
CCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGGCCATATCTTCAAGG
CTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTG
AAGATCTTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATG
GATCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAA
TTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTC
GAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGGCCTTCAATC
TATTCCATTGGGCTACTTGCCTGTTTCTAACCAGTACCATGCAGTTTTTA
TTCCAATTGCTCTGGAAAAAAAGCTTTAGGTCACGCCTTGGGGAATCCCC
CCAAGGGTTTTTTTTCCCTTGAAAAAGATTTTTGCTTACCCAAGGTTTTT
TTTG

NNCCGCCCNNNNNNNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCAGC
TACACATTAATAAATTAAAAAATCTTTGGAAAAACCTCATTTTGCGTTCA
CAATGCCTTCAAATGAAATTGTGCTTGTCCTTGCGTTTGGCCTCCGTCCC
ATGGACACATTCTTGGGTGAACTGGTTGGGATTTTGGCCTCTCTAGCAAT
GACTTTTGCTTTTCATTTGCTTTCATTAGCTTGCCAAAACATTAGATTTT
TGTTATGGGATTTTTCAAAGTTCATGCTGCTGTTTTTCTCTGCCCTGTGT
CATCCTTCTCTTCTCACCCTGGTATCTTCTAATCAATCCCTAGCAAAGCC
CTTTTCTGCTGTCACATCATGTGAATTTCCACGCACCCTTTTCTCAACTA
ACCCCTCCATTCTCCATTCCCAAGGGGCCCCCCCAAAATATAAAAACCTC
CCCCCCGGGGGTTTTAAAATAAACCTCCCTCCCCCTTTTTTTCTTTGTTG
GGGGNGTTNNNNNTNNNNNTNNNNACNNNCCANNNNNATTTGTGNNTTGT
ATTTATATTACACCCGTTATATTTATACATTATACTATTTTTCATCTATT
ATTACTTTAATTCCTTCTTTAAATTATTCTTACTTTATTACACCATCACT
ACCTATGATACTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_f12.g1 MSMg01no345_f12.g1 CHROMAT_FILE:
MSMg01no345_f12.g1 PHD_FILE: MSMg01no345_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:47 2005
         (303 letters)



>mm_chr13_80835726_80836428
          Length = 703

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcagctacacattaataaattaaaaaatctttggaaaaacctcattttgcgttcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcagctacacattaataaattaaaaaatctttggaaaaacctcattttgcgttcaca 260

                                                                       
Query: 61  atgccttcaaatgaaattgtgcttgtccttgcgtttggcctccgtcccatggacacattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgccttcaaatgaaattgtgcttgtccttgcgtttggcctccgtcccatggacacattc 320

                                                                       
Query: 121 ttgggtgaactggttgggattttggcctctctagcaatgacttttgcttttcatttgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggtgaactggttgggattttggcctctctagcaatgacttttgcttttcatttgctt 380

                                                                       
Query: 181 tcattagcttgccaaaacattagatttttgttatgggatttttcaaagttcatgctgctg 240
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tcattaacttgccaaaacattagatttttgttatgggatttttcacagttcatgctgctg 440

                                                                       
Query: 241 tttttctctgccctgtgtcatccttctcttctcaccctggtatcttctaatcaatcccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttctctgccctgtgtcatccttctcttctcaccctggtatcttctaatcaatcccta 500

              
Query: 301 gca 303
           |||
Sbjct: 501 gca 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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