TGATGAGAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAG
AGGATCCGCGGAATTCAAGAGATCCACCTGCCTCTGCCTCTAGGATAAAT
AGTATCCTGGAGGTGTGTTCCAGGACCACAGAGATTGGACTACCAGAGAG
TCTGCCTGGGGCAGACCTAGTTCTGCAGCTTGGTCTTCATGTGGAACTTG
TAACAGCAGGGGCAGGCTGACTGTGTTGCCTGCCTTTGTATCCCTTTCTC
CTAACTGGGCTACCTTGTCTAGCCACAGTACAAGAAGATGTGCCTAGTCC
TACTGCAACTTGGTATGCCTAGGTGGATTGATATCTATAGTAGGCTTTCC
TGTTTCTGAGGAGAAAGTGAAGACAGGAGGATGGGGTAAGAGGAGATGAG
AGGGAAGGACAGAGCTCTTGAGGAGGGAGGAAAAGATGCAATCGGGGTGT
AAAGTAAATTAGTAGTAGTAGTAGTAATAGTGTGTAGTGCCCATCACTGC
TCAGCTTAGTTTCTTTACTCTTGTTTAGAGTGTGGCATCTTTAAATACAA
GTGGTTACATCTCAATTCAATCCTATCTTGTCTATGCTACCTATAATTTA
GGATATAGTGAAGCTTTTCCAGCAAAGTAAAAAATGTATTGTAATTTCTA
CCCCCTTCCTCCCTCTCCCTTTCCCTTCGCTTCTTTTCCTCCCATTGGTT
TCTTCCCTACCTTCCCTCCCTTTCCTCCTCTTTCTTCCTTTCCTTCTCTT
TCG

TTTATGGTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGACCACCAGGGT
TATACAGAGAAACCCTGTCTCAAACAAACAAACAAGAAGTGCCCAAAGTA
AAATGAAGAGTCATATAGCCATTATTGTATTTTAAAATGGTATAAAATGT
TTACATTAAGACTATATCAAAGTGTGGAGCAGATACTGAAGGAAAACCCA
TCCAGAGACTGCCCCATCTGGGAATTCATCCCATATACAGACACCAAATC
CAGACACTATTGTGGATGCCAAGATGTGTTTGCTGACAGGAGCCTGGTAT
AGATCCTGAGAGGCTGACAAATACAGCTGCAGATTATCACAGCCATCCAT
TGGACTGAGTACAGGGACCCCAATGGAGGAGATAGAGAAAGGACTGAAGA
AGCTGAAGCGGTTTACAACCCATAGGAAGAACAACAATATCAACCAACCA
GAACCCCCAGAGTTCCTAGGAACCAAACCACCAACCAGAGTACACATGCA
GGGACTCATGGCTCCAGAAACATATGTAGTAGAGAATGGCCTTGACTGGT
CTCTATGTTAAGTAGAGGCTTGTTGCTGCAGTGCAATGGGATTGCCACGC
CCGGTGATGCAGGAAGCTGCTTGTTCTGGCAAATTTATCCCCCTTTCTTA
TAATCTTTTCTTCACCCTTGTCTTTCTTTTACTAACTCATTTTTCTCTTA

Query= MSMg01no345_k02.b1 MSMg01no345_k02.b1 CHROMAT_FILE:
MSMg01no345_k02.b1 PHD_FILE: MSMg01no345_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:07 2005
         (539 letters)



>mm_chr13_117988935_117989873
          Length = 939

 Score =  992 bits (513), Expect = 0.0
 Identities = 528/533 (99%), Gaps = 2/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcaagagatccacctgcctctgcctctaggataaatagtatcctggaggtgtgttc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcaagagatccacctgcctctgcctctaggataaatagtatcctggaggtgtgttc 267

                                                                       
Query: 68  caggaccacagagattggactaccagagagtctgcctggggcagacctagttctgcagct 127
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 caggaccacagagattggactaccagagaatctgcctggggcagacctagttctgcagct 327

                                                                       
Query: 128 tggtcttcatgtggaacttgtaacagcaggggcaggctgactgtgttgcctgcctttgta 187
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 328 tggtcttcatgtggaacttgtaacagcgggggcaggctgactgtgttgcctgcctttgta 387

                                                                       
Query: 188 tccctttctcctaactgggctaccttgtctagccacagtacaagaagatgtgcctagtcc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tccctttctcctaactgggctaccttgtctagccacagtacaagaagatgtgcctagtcc 447

                                                                       
Query: 248 tactgcaacttggtatgcctaggtggattgatatctatagtaggctttcctgtttctgag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tactgcaacttggtatgcctaggtggattgatatctatagtaggctttcctgtttctgag 507

                                                                       
Query: 308 gagaaagtgaagacaggaggatggggtaagaggagatgagagggaaggacagagctcttg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gagaaagtgaagacaggaggatggggtaagaggagatgagagggaaggacagagctcttg 567

                                                                       
Query: 368 aggagggaggaaaagatgcaatcggggtgtaaagtaaattagtagtagtagtagtaatag 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aggagggaggaaaagatgcaatcggggtgtaaagtaaattagtagtagtagtagtaatag 627

                                                                       
Query: 428 tgtgtagtgcccatcactgctcagcttagtttctttactcttgtttagagtgtgg-catc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 628 tgtgtagtgcccatcactgctcagcttagtttctttactcttgtttagagt-tggtcatc 686

                                                                
Query: 487 tttaaatacaagtggttacatctcaattcaatcctatcttgtctatgctacct 539
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 687 tttaaatacaagtggctacatctcaattcaatcctatcttgtctatgctacct 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)