Query= MSMg01no346_b17.b1 MSMg01no346_b17.b1 CHROMAT_FILE:
MSMg01no346_b17.b1 PHD_FILE: MSMg01no346_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:42 2005
(528 letters)
>mm_chr13_16735302_16736231
Length = 930
Score = 980 bits (507), Expect = 0.0
Identities = 521/527 (98%), Gaps = 4/527 (0%)
Strand = Plus / Plus
Query: 5 gaattccaagatgactaaattttgtaccagagaaaattgtacttcaacataattgtttgt 64
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagaggaataaattt-gtaccagagaaaattgtacttcaacataattgtttgt 263
Query: 65 tttttagatcttatgtgtgtcatgcatttacttaagggagttcatgacctcatcatactg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttttagatcttatgtgtgtcatgcatttacttaagggagttcatgacctcatcatactg 323
Query: 125 ccactgtcataatataaaaggtaaaggagattttaaaccctggacacagagattatcagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccactgtcataatataaaaggtaaaggagattttaaaccctggacacagagattatcagc 383
Query: 185 cgattatttgtaattttttttgtactcagaattacctttctaggatctcaaagcatatta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgattatttgtaattttttttgtactcagaattacctttctaggatctcaaagcatatta 443
Query: 245 ccagacaaattctcctaaaaatctccagacatttgagcagtgtggtttccttagcagata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccagacaaattctcctaaaaatctccagacatttgagcagtgtggtttccttagcagata 503
Query: 305 gtaaattaatgaaagtggcaagaaagacaactttattatggtttgtgggactaaccaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaaattaatgaaagtggcaagaaagacaactttattatggtttgtgggactaaccaaga 563
Query: 365 tgaagagagtttgaatgagcttccttcagatacccaaacttcaattttatcaggaagaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaagagagtttgaatgagcttccttcagatacccaaacttcaattttatcaggaagaga 623
Query: 425 tttattctaaacccctgagctttgccctttttgagtcaatacttaattgggaaaaaaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttattctaaacccctgagctttgccctttttgagtcaatacttaattgggaaaaaaaaa 683
Query: 485 a---ggtgtggttccaaaataaagcagtgaaagagagggcccagtct 528
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaaaggtgtggttccaaaataaagcagtgaaagagagggcccagtct 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 930
Length adjustment: 10
Effective length of query: 518
Effective length of database: 920
Effective search space: 476560
Effective search space used: 476560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_b17.g1 MSMg01no346_b17.g1 CHROMAT_FILE:
MSMg01no346_b17.g1 PHD_FILE: MSMg01no346_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:42 2005
(522 letters)
>mm_chr13_16861339_16862262
Length = 924
Score = 874 bits (452), Expect = 0.0
Identities = 493/522 (94%), Gaps = 26/522 (4%)
Strand = Plus / Minus
Query: 1 ctaggtggggaatcagtggggacagaggtgaacgccacacggttcagtccaattttctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctaggtggggaatcagtggggacagaggtgaacgccacacggttcagtccaattttctgt 455
Query: 61 cctgcgtttttagcatctttatgtttcttggtttcagccaacat--gagagagagagttt 118
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 454 cctgcgtttttagcatctttatgtttcttggtttcagccaacatgagagagagagagttt 395
Query: 119 gtgagctgcatatgaccataacaagtgggttggggtttccactggcgattaatttaaatg 178
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gtgagctgcagatgaccataacaagtgggttggggtttccactggcgattaatttaaatg 335
Query: 179 cttcaccttccttccacttttaatctgaagtgcattatggtccccaaggaagccccagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cttcaccttccttccacttttaatctgaagtgcattatggtccccaaggaagccccagca 275
Query: 239 ttttacaggcctctggtttactgaggggagcagcaaatggatggaaaactattctttgtc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttttacaggcctctggtttactgaggggagcagcaaatggatggaaaactattctttgtc 215
Query: 299 atgtctggtttacagacacctgtaatcaatcatcagatgagtggggatttactgaaacaa 358
|||||||||||||| |||||||||||||||| |||||||
Sbjct: 214 atgtctggtttaca----------------------atgagtggggatttacggaaacaa 177
Query: 359 ttgcattagaaaagcactaatcccagttgtcagtgtgatgagtcagatagggaaacacag 418
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 176 ttgcattacaaaagcactaatcccagttgtcagtgtgatgagtcagatagggaa--acag 119
Query: 419 gaggaaggcgaggtcctttccattttgttttctacattgactggagcaacttaacaagcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gaggaaggcgaggtcctttccattttgttttctacattgactggagcaacttaacaagcc 59
Query: 479 aagaccaaggcagctctgagccacacagctggcactccataa 520
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 aagaccaaggcagctctgagccacacagctggcactccataa 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 924
Length adjustment: 10
Effective length of query: 512
Effective length of database: 914
Effective search space: 467968
Effective search space used: 467968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
