BAC Information

Click to search

BAC

Clone NameMSMg01-346B23
Chromosome13 (Build37)
Map Location 44,000,344 - 44,000,686
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83
Downstream geneLOC100039432, A730030A06, EG637868, EG667157, Jarid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346B23.T7 (MSMg01no346_b23.b1)MSMg01-346B23.TJ (MSMg01no346_b23.g1)
ACCAG458784AG458785
length7641,050
length of high quality
(start - end)		514 (30 - 543)---
definitionCHROMAT_FILE: MSMg01no346_b23.b1 PHD_FILE: MSMg01no346_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:43 2005CHROMAT_FILE: MSMg01no346_b23.g1 PHD_FILE: MSMg01no346_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCTTGGTCCTG
GGCTCTTGCATCTCCCACAGGTCTCTGACATACTAGAGGCCATAGAAAAG
AAGCAAACTTAGTTAACACCAAAAAGATCTTGTCCTGCCTATCCTACAGA
AGGCTGTAAAGTGGTTCCTGAAGCTGGAGAGATGGCTCAGAGGTGGCACA
AGAAGCCCGAAGACCTGATTTCAGACGTGAGCAGCCATGTAAAAAGCTGG
GCATTGTGGTGTACTTCCATAACCCCAGGGCTCCGGTAGAGGAAGGCCCA
GGGACAAGGCTCCTGGGGGCTCTCTGGCTAGCTAGTCTAGCCAATCAGTG
AACTCCGGGTTCAGTGAGAGACCCTGTCTCAAAAATTAGAGAGTAATAGA
GAAAGATGCCAGATATTGGCCCGTGACCTACATGTGCAGACATTATTGAG
TGCAGTTACACAATGTATGTATGCATGCATGCATGCAGAAGTGGTTATTA
GCACCTCTCCACAAGGAGTTGCTAGCTGGTCTTAGGGGTTAAGAGGTTGA
CCAGTGGCATTGCTACAGCCTCAGCTAAAAGGGGTCCTTCACCCAGGCTT
TGAGCAACCGGATTCAGGAAAGCTTCCCGCAGACCTNTTNAGAGAGAGAG
AGAGATAGAGAGAGAGACAGATTGTTTGTCGCCCCTCCCCCCCCTCCTTC
TTTCCTCCCCCTCCTTCTTTTCCTCCCACCTCTTTCTTTTCCCTTCATCC
CTTTTCCTTCTCCG

GTTCCGGAGGGGCGNCCGGGCTCCAATATAAAGGGGGANNNNANAGANAG
GTTGNACAATCATGCCGCNCGTNGGGGGNACATAGGNAATGNGGGGATTA
GTAGTGGGTGGTTTATTTTTATCCATATAAGAGAGGTGGTAGTATTGTGT
ATTGTGGAGTGGTGGGTTTGATTTGAGTGGGGGGGAGGATGTGGATATGT
TATTAGGGAGTAAGGATATGTTATAGTATTNGAGTGTGATATAAGATATG
GTTTGAGATGTTAGTAGAGGTAATGTTAGTTGTTTTTATATGAGGTAATN
NATTTGTGTTGGAATGAGTGGATTTAGGGTTTGTATTGAGTTTTGAGAGT
GGTGGATAGATAAGTTGTTTTTTTTTGTTTTAATAATGATGATAGTGTAA
AAGAAGATTTGTATATGGATAGTTTGTATATTTGATGTAGTTGGTAAAAT
TTATGGGTGGAGAAGTTTATTATATAATATTTTTTATGTTTATTTGTTTT
TAGGGTAAAANTAATGGTATATATTATTATTTATTATGTGATTGGGATAT
TAGTTATTATGTAATTTTAAAATTGTAAGGATGGTAGAGAGTTAGGTGTG
ATTGTTAGGTATTAAAATGTATGATGTTGTTGAAGAGTGTTATTTTTGTT
AGTAATTANGATTTATGGTGGATATTTAGAGTTATGTAGATGTTTTTTTC
TCCTTATAGCGCGCCGTTCTATCTTTTTATGATGTTTCTGTACGACACAT
ATCCTTGACTTTTTTCGCTCTTATACTGCTGTAACACCTTGTTATTGCCA
CCACACTTTTTCTACAACATCTTCCTGTTTTTATCCTTTCCGCGTGTTTT
CCACTTACCCCCGCCGTTTGTCTCGCCTTCTCCACCCCTTGTATTTCCAT
CCCTTTGTTTATCCACACCCCTGTTTTTCGGTAATAATAATTGTTGCGCC
AAACTGTTTCATAAATGATACTCTATTCGCGACTAATATTATCAGTCTTT
TACCTCGTTATATTCACGCTGTTGTGTTCGCGCCATATTATGAGCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_b23.b1 MSMg01no346_b23.b1 CHROMAT_FILE:
MSMg01no346_b23.b1 PHD_FILE: MSMg01no346_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:43 2005
         (514 letters)



>mm_chr13_44000344_44001257
          Length = 914

 Score =  632 bits (327), Expect = 0.0
 Identities = 339/343 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcttggtcctgggctcttgcatctcccacaggtctctgacatactagaggccata 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggaattcttggtcctgggctcttgcatctcccacaggtctctgacatactagaggccata 284

                                                                       
Query: 66  gaaaagaagcaaacttagttaacaccaaaaagatcttgtcctgcctatcctacagaaggc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 283 gaaaagaagcaaacttagttaacaccaaaaagatcttgtcctgcctatcctacagaaagc 224

                                                                       
Query: 126 tgtaaagtggttcctgaagctggagagatggctcagaggtggcacaagaagcccgaagac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tgtaaagtggttcctgaagctggagagatggctcagaggtggcacaagaagcccgaagac 164

                                                                       
Query: 186 ctgatttcagacgtgagcagccatgtaaaaagctgggcattgtggtgtacttccataacc 245
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 163 ctgatttcagatgtgagcagccatgtaaaaagctgggcattgtggtgtacttccacaacc 104

                                                                       
Query: 246 ccagggctccggtagaggaaggcccagggacaaggctcctgggggctctctggctagcta 305
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ccagggctcgggtagaggaaggcccagggacaaggctcctgggggctctctggctagcta 44

                                                      
Query: 306 gtctagccaatcagtgaactccgggttcagtgagagaccctgt 348
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  gtctagccaatcagtgaactccgggttcagtgagagaccctgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |