BAC Information

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BAC

Clone NameMSMg01-346C20
Chromosome13 (Build37)
Map Location 88,268,698 - 88,269,042
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675707
Downstream geneLOC667230, EG435375, Edil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346C20.T7 (MSMg01no346_c20.b1)MSMg01-346C20.TJ (MSMg01no346_c20.g1)
ACCAG458825AG458826
length782750
length of high quality
(start - end)		349 (33 - 381)554 (63 - 616)
definitionCHROMAT_FILE: MSMg01no346_c20.b1 PHD_FILE: MSMg01no346_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:48 2005CHROMAT_FILE: MSMg01no346_c20.g1 PHD_FILE: MSMg01no346_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCCATAT
ATTCTAGTCTCTTTGGTATGGAAAGATACTCTGGAGGCCACAGAAATAGA
AACTTGGACATGAATACAGCCACGAAACCTCAACCTTCATATGTATCTTG
ACAGCAAGATGTGCTGGGGCAGTGGTGGTGCAGAACTCTTATGGGAGTGA
CTTACCAATGTCTGTTATAATTTGAGGCTGTGTTAAAACTTGAGGCTCAC
AGCAAGAGAGGAAATCCTTGCCCTACACTGCCTGTATGGCCAGGTACAGG
AGACTGAATAGGCAAGAGACCTAGATTAGTAACAAACATGACTGTATATA
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNTTTTCCCTTTTTTTTTTC
CCCCCCTCTTTTCTCCCCCTTTTTTTCTTTCTTTTTCTCCCCCTTCCCCC
CTTTTTCCCTTTTTTTCCCCCCCCCCCTTCTTTTTTTTCCCTTTCCCCCC
CTTTTCCTTCCTCTTTCCCTTCTTTCCCCCTCTCCCCTTTTTCTCCTTTC
CCCTCTTCCCCTTTTCCTCTTTTCCCTTTTTTTCTCTCCCTCCCCCTCCC
CCTATTTCTTCCCCCCCTCCTCCCCTTCCCTCCTTCTCCCCTCTTTTTCC
TTTTTTCTTTTTTTTTCCCCTTCTCCTCTCCTTTTTTTTTTTTTTTCTCC
CCCTCTCCCCTCCTCTTTTTTTTTTTTTTCTTCCCTCTCCTTTTTTTTTC
TTCTCTTTTTCTCTTCTTTTTCTTCTTTCTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCTCCTAGAACTGCCTTCATTGTGTCTCTAAGTGTGG
CTATTCTGTGCCCTCATTTTCATTGAATTCCAAGAGGTTTTTAATTTTAT
CTTTATTTCTGCATTGACACAGGAGCTATTAAGTAGAGAACTGTTTAGTT
TTCAAAATTTGTAAAATATCTGTTGAAAGTGTCATTGTTTTTTATCCTTT
ATTTATTTATTATTTTACACTCCAGATTTTATTCCCCTCCCAGTCCACCC
TCCAGCTAATTCACATCCCATACCTCCTCCCTGCCCCCTGTCTCCACAAG
GATGTCACCACCCCCACAACCCACCCCAACAGACCTCTAAACTCCCTGGG
GCATTCAGTCTCTTGACGGTTAAGCATATTATCTCTGATTAAACATAGAC
CTGGCAGTCCTCTGTTGCATATATGTTGGAGGCCTCATATCAGCTGGTGT
ATGCTGCCTGGTTGATGGTCCAGTGTTTGAGAGATCTTGGGGGTCCAGGT
TAATTGAGACTGCTAATTCTCTTACCAGATCACCCTCCTTCTCAGCTTCT
TCCAGCTTTTTCTTNAATTCAGCACAGAGTTCAGCAGCTTTTGTCCATTG
GNTGGATGCAATATCTGCATCTGACTCTTTCAGCTACTTGTTGGGGCTTT
CGAAGGCAGTCATGATGGGTCCCCTTTTTGTGAGGATTCCTAAACTCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_c20.b1 MSMg01no346_c20.b1 CHROMAT_FILE:
MSMg01no346_c20.b1 PHD_FILE: MSMg01no346_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:48 2005
         (349 letters)



>mm_chr13_88268494_88269242
          Length = 749

 Score =  636 bits (329), Expect = 0.0
 Identities = 341/345 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacccatatattctagtctctttggtatggaaagatactctggaggccacagaaa 64
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcacccctatattctagtctctttggtatggaaaaatactctggaggccacagaaa 264

                                                                       
Query: 65  tagaaacttggacatgaatacagccacgaaacctcaaccttcatatgtatcttgacagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagaaacttggacatgaatacagccacgaaacctcaaccttcatatgtatcttgacagca 324

                                                                       
Query: 125 agatgtgctggggcagtggtggtgcagaactcttatgggagtgacttaccaatgtctgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatgtgctggggcagtggtggtgcagaactcttatgggagtgacttaccaatgtctgtt 384

                                                                       
Query: 185 ataatttgaggctgtgttaaaacttgaggctcacagcaagagaggaaatccttgccctac 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataatttgaggctgtgttataacttgaggctcacagcaagagaggaaatccttgccctac 444

                                                                       
Query: 245 actgcctgtatggccaggtacaggagactgaataggcaagagacctagattagtaacaaa 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 actgcctgtatggccaggtacaggagactgaataggcaagagacctagattagttacaaa 504

                                                        
Query: 305 catgactgtatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 349
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgactgtatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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