Query= MSMg01no346_i22.b1 MSMg01no346_i22.b1 CHROMAT_FILE:
MSMg01no346_i22.b1 PHD_FILE: MSMg01no346_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:17 2005
(485 letters)
>mm_chr13_45530221_45531108
Length = 888
Score = 895 bits (463), Expect = 0.0
Identities = 476/482 (98%), Gaps = 3/482 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaagcagtgctggaggaccatattaaagatgaacccaggataataaacaaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaagcagtgctggaggaccatattaaagatgaacccaggataataaacaaaca 264
Query: 65 aacaagaatctgactcctttagcaattgaagttcaaaaaaggaaatggaaacaaattacg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacaagaatctgactcctttagcaattgaagttcaaaaaaggaaatggaaacaaattacg 324
Query: 125 ccagtgaaaagcaaagcaaggttttcttctttgacaacaagggaagagcatttatatacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagtgaaaagcaaagcaaggttttcttctttgacaacaagggaagagcatttatatacc 384
Query: 185 gttcacatttatgacttaatataatccacggctgatgaggaacgtcctatatctccctgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttcacatttatgacttaatataatccacggctgatgaggaacgtcctatatctccctgg 444
Query: 245 atagcaactataagtagatatgattcacacacgtaccttcctttcatcagctattgccaa 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atagcaactataattagatatgattcacacacgtaccttcctttcatcagctattgccaa 504
Query: 305 gcacgccctcaatttctaaaaaaa---cgtttctgttcttagtgaaataaacagcaaagg 361
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 gcacaccctcaatttctaaaaaaaaaacgtttctgttcttagtgaaataaacagcaaagg 564
Query: 362 tgctcgctgtgtatggcaacggagcaccggggcgtggccgcacctgcgcagtgtgattct 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgctcgctgtgtatggcaacggagcaccggggcgtggccgcacctgcgcagtgtgattct 624
Query: 422 tgccctggaaagctggatcaggnggtgggctttgaaggaaacagataaacaaacactgga 481
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgccctggaaagctggatcagggggtgggctttgaaggaaacagataaacaaacactgga 684
Query: 482 ag 483
||
Sbjct: 685 ag 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 888
Length adjustment: 10
Effective length of query: 475
Effective length of database: 878
Effective search space: 417050
Effective search space used: 417050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_i22.g1 MSMg01no346_i22.g1 CHROMAT_FILE:
MSMg01no346_i22.g1 PHD_FILE: MSMg01no346_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:17 2005
(509 letters)
>mm_chr13_45710598_45711506
Length = 909
Score = 961 bits (497), Expect = 0.0
Identities = 506/509 (99%)
Strand = Plus / Minus
Query: 1 cagaaaagacagatgtagtagaagtagcctacttgcagctttctggaagtaaaagggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 cagaaaagacagatgtagtagaagtagcctacttgcagctttctggaagtaaaagggttt 650
Query: 61 gagttttgccattcaaccggcatgacagaagaatcattttactaattcaaccagatgcct 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gagttttgccattcaactggcatgacagaagaatcattttactaattcaaccagatgcct 590
Query: 121 aaaagcctttggcctacctgagcatgcaggataggactcaaatgtatcatacctgtccag 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 589 aaaagcctttggcctacctgagcatgcaggataggactcaaatgtatcatgcctgtccag 530
Query: 181 cttcccaacaaacaggaggttgggagtgtgccccgactgcttgtgagatagcaggaaatg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 529 cttcccaacaaacaggaggttgggagtgtgccccggctgcttgtgagatagcaggaaatg 470
Query: 241 cagataagcagtggtgatccattctggaagaggggtagcttaaaacagtggagcatgctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cagataagcagtggtgatccattctggaagaggggtagcttaaaacagtggagcatgctt 410
Query: 301 tttagcttgccttggggattgtgcagataaagtgagcagccacaacagataaagagggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttagcttgccttggggattgtgcagataaagtgagcagccacaacagataaagagggaa 350
Query: 361 ctggaattccattgctatcattgtatcacaactaccttccaggccatcccttcacaggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctggaattccattgctatcattgtatcacaactaccttccaggccatcccttcacaggac 290
Query: 421 agtgacatcatgttacgccgatagatttccagggctgccggctcaaacacctcaacacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agtgacatcatgttacgccgatagatttccagggctgccggctcaaacacctcaacacaa 230
Query: 481 gtggcttaaacagcacaacctgtctcacc 509
|||||||||||||||||||||||||||||
Sbjct: 229 gtggcttaaacagcacaacctgtctcacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
