BAC Information

Click to search

BAC

Clone NameMSMg01-346J03
Chromosome13 (Build37)
Map Location 117,998,148 - 117,998,444
singlet/doubletsinglet
Overlap genenone
Upstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312
Downstream geneEmb, EG623365, LOC382807, Hcn1, LOC100041695, LOC674926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346J03.T7 (MSMg01no346_j03.b1)MSMg01-346J03.TJ (MSMg01no346_j03.g1)
ACCAG459124AG459125
length770842
length of high quality
(start - end)
297 (61 - 357)---
definitionCHROMAT_FILE: MSMg01no346_j03.b1 PHD_FILE: MSMg01no346_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:18 2005CHROMAT_FILE: MSMg01no346_j03.g1 PHD_FILE: MSMg01no346_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTTCTTGCTGATTTCAGGACTGAGACAGCCAGACTGTAGAGGCAGTCCCT
TCCCACGGGGTGCTCACAGTGTGACTGGTTTTCAATTCCAGACAAACACA
AGGACAGCTTCCTTGTGGACCCTGACTCCAGCCTATTAAAAGAAGGCATC
AAATGTAGTTGCCGTATCTCACCACAGTCTCTCTGACCTGCCCACACTTA
AGGGGTGGGGGGCAGTGGAGCTTACAAGTCATCTCTCCAGGGACAGATCT
TAGATGCTAGTGTGTAAACTTGCTTAGCTTTAATTTATCTTGTTGGCTTT
TGACTTACCTGCTTTACTTATAGTCACTGGCGAATTCTCCATACTTTATA
GACGCATATCATGTGATATTGTCTCTAATATAAAAATCCTAACATTATTT
TTCAATAATAGCTAACTCCCATCTCCACCTTCTTTTTCATGTCTTTAACC
TTTACCCCCAGGACTGCATCCAACATAATTCTACTCCTCTATTCAGCATA
ATGTCGATAATAGTATACGCCACACTTCATATTCTACTACATTTGTTTTC
TCATTCTCCCATAAACTTTTCCCCACCATCTTTTTTTTTAATATCTTTTT
TTACACACTTTTTTGTTCCTTTATTTTCTGACTCCAATTATTTCCCCCAT
CCCCCCCATTTTTTTCCCCCCGCATCAATAAATTTGTATACCTTCTCATC
CCCATGTTTCTCTCTCTCCC
TTACCCCCTCTCCATACCTTCCTTCCTCCTTCCCCCCTTCTACCCCCTTC
CTTCTTTTTTTCCCCCCCCCCCTCTTTATATATATTTTCCGCGCTTTCCA
TATCCGAGCATAGTTGTAGCTCTTTTTCTCCCCCTTTAGTTGGCTCTTCC
CCCTATTTTAATACCATTACATATTTGGTTCCTAACCCTTTTTATTCCTT
TCAACCCCTTANNAATATATATTTTCTTTGACACTTTTCTNNCTCNTTNT
TTTTCTCCTCTTNGCCCCCTNCNNCNNNNNNGGCCGAAAAGGNAAAAAGT
GGGGGGTTAAGGGGCCCCCGGGGGGGCGGGGGGNNCACGCGGCCCCCGTG
GGTTTTTCCTCCCCCCCCGAAAAAAAATTTTTTTAAAGGTGGGAACCCCC
TAAATTAAGAAAAGGGTATCCCCCCGCGGCGGGAAAATTTCTCCAGGGAA
ACCCACCCAAGGGGGTTTTAATCCCCGGAAAAAAAAACCCCCCGGTGGTC
CCCACAAAAAACAAAAAACAAAACCAAAGAAAAAAAGGGGGGGCCCCCCC
ACAAAGGGGGGGAAAAAAATTTTGGGGGGGAAAAAAAAAAGGNNCCCATA
AAAAAAAAATNNNTTCTCCCCCAAAGGGGGGGGTTTTATAAAAAAGGGGG
GGGAAAAAAAAGGGGGGTTTTCCTTTTTTAAAAAAAAATTTTTCCCCGGG
GGGGGGGGGGGGGGAAAAAAATTTTCGGGGGGGGGGAAAAACACCCCCCC
TCCCTTAAAAAAAAAAGGGGCCCCCCCCCCCCCGGGNGGGAAGAAAAAAC
ACTCCTCCCCTTCCCCCCTCNAAAGCAAAGCACACCAACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_j03.b1 MSMg01no346_j03.b1 CHROMAT_FILE:
MSMg01no346_j03.b1 PHD_FILE: MSMg01no346_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:18 2005
         (297 letters)



>mm_chr13_117997948_117998644
          Length = 697

 Score =  522 bits (270), Expect = e-153
 Identities = 291/298 (97%), Gaps = 2/298 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcaggactgagacagccagactgtagaggcagtcccttcccacggggtgctcacagt 60
           ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 201 atttcaggactgagacagccagactgtagagacaatcctttcccacggggtgctcacagt 260

                                                                       
Query: 61  gtgactggttttcaattccagacaaacacaaggacagcttccttgtggaccctgactcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgactggttttcaattccagacaaacacaaggacagcttccttgtggaccctgactcca 320

                                                                       
Query: 121 gcctattaaaagaaggcatcaaatgtagttgccgtatctcaccacagtctctctgacctg 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gcctattaaaagaaggcatcaaatgtagttgccatatctcaccacagtctctctgacctg 380

                                                                       
Query: 181 cccacacttaaggggtggggggcagtggagcttacaagtcatctctccagggacagatct 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccacacttaaggggtggggg-cagtggagcttacaagtcatctctccagggacagatct 439

                                                                     
Query: 241 tagatgctagtgtgtaaacttgcttagctttaatttatcttgttggctttt-gactta 297
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 tagatgctagtgtggaaacttgcttagctttaatttatcttgttggctttttgactta 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)