BAC Information

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BAC

Clone NameMSMg01-348K07
Chromosome13 (Build37)
Map Location 115,773,941 - 115,774,102
singlet/doubletsinglet
Overlap geneItga1
Upstream geneArl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975
Downstream genePelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348K07.T7 (MSMg01no348_k07.b1)MSMg01-348K07.TJ (MSMg01no348_k07.g1)
ACCAG460690AG460691
length651835
length of high quality
(start - end)
---164 (67 - 230)
definitionCHROMAT_FILE: MSMg01no348_k07.b1 PHD_FILE: MSMg01no348_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:00 2005CHROMAT_FILE: MSMg01no348_k07.g1 PHD_FILE: MSMg01no348_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCTTTATCCTCTTCTCTCTCCCCACCCTTTTTTTTTTCTATATTTGC
GGTCGCTAATACGNACTCCTATTTTCAGAGGATCCGCGGGAATTCTAGGA
TATATCCAGGCATGGGGAGATTCACCAGGGNAAGATGTGACAAGACGGAC
CCATGGTACCTGAGCGCAGGTAACAAGCCACGTGGCAGAATGTAGATTAG
AGTAAATGAGATATTTTTAGTTATATCTCGTCAAAAATGGTCTAGCTAGA
TGGTCCAGGTATTTGAAATCTATTTGAATCTGAGCTTAATTTATGGAGGC
TTGCGGCCTTAAAAGGAAAAAAAACCTCCCCCCTTTTTTTCCGGGCCCCC
CCTTTTTGGAAATAAATATAAACCCCCCCTGTTTGTGGCCCAACAAAAAA
AACCCCCCCCCCTTATAAAAAACATCCTCCCTGTTTTTTTTTGCTTTTTA
AGTTGTTTTTTATCCTTTCTACAATTCCCCTTTTTCTTTTTCCTTCTTTC
TTTTTTCCTCTTTTTTCCCTTTTTTTCCCCCTCCCCTTTTTTTCTTTTTC
TCTTTTTCCCCTCTCCTCTCTCCCCTTCACCTTCCGCTTTTCCTTTTTTT
CTCTTATTCCTTCCCCCTTTCTCCTCTCCCCCCCCCCTTTTTTCTTCTTT
T
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGATTTTGCAATATGTTCTATCTAGTCTGGGGA
GTCAGAGAAAGCCGCACGCAGTTGTGACTCTTGAGTCAAGCCCTGCAAGA
ATGGATGACTTTACAGTGTGGGTGGGTGACGGTGCCTGTCAAGATGCTAA
GCCATTGAAGAACCACACAAAACTCAGCNACTGGNCAGNTNTGTAAATCT
CGCTCGNTGGCAGAAACATGAAGCTGATTCAGCATTATGGCCAGAACTTC
CCAANAAAGAACCCCCCTAAATTTTTGGGCGGGCGCTTCTTTTCTCCCTT
CCTCCTTTCTTTTTTCCTTTCCCCCCCCGCCGGCGTGTTGTGGTGTTTTT
TTTTTTTTTCTTTTTCTCGTTCCTCCTCTTTTTGTTCCTTTCTCTTGCTC
TCCTTTTTATTACCTCTTTTATCTCTTTCTTAACCCCTCCCTTCCTTACT
TTTTTTCTATTACCTACACCTTGTTTTTCGTCCTTTTCTTCCCCTCTTTT
ACTTCTCCCATTCATCTACCGCCCTTTTTTTTTTTCTTCTCTCCTCTCTC
TCCTATTTTTTTCTTCCCATTTCCCTCTTTTTCTTCTCCCCCTCAACATC
CTTCTTTTTCTTACTTTTTCGCCCCACCTCCGTCGACTCTAATCCCTCTC
TTCTTCTATCTCACCTTTCCCATTCGTTTTCTCTTTTCCCCCCCTAGCAC
TCCATCACTTTTTTTACCCCTTTCCCACCACGTCACTTTTCATCCCTGCA
CCCTCTTCCTTTTATTTTTTATTTCTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_k07.g1 MSMg01no348_k07.g1 CHROMAT_FILE:
MSMg01no348_k07.g1 PHD_FILE: MSMg01no348_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:00 2005
         (164 letters)



>mm_chr13_115773741_115774304
          Length = 564

 Score =  313 bits (162), Expect = 3e-90
 Identities = 162/162 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagattttgcaatatgttctatctagtctggggagtcagagaaagccgcacgcagttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cagattttgcaatatgttctatctagtctggggagtcagagaaagccgcacgcagttgtg 303

                                                                       
Query: 61  actcttgagtcaagccctgcaagaatggatgactttacagtgtgggtgggtgacggtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 actcttgagtcaagccctgcaagaatggatgactttacagtgtgggtgggtgacggtgcc 243

                                                     
Query: 121 tgtcaagatgctaagccattgaagaaccacacaaaactcagc 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgtcaagatgctaagccattgaagaaccacacaaaactcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)