BAC Information

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BAC

Clone NameMSMg01-348P10
Chromosome13 (Build37)
Map Location 115,484,268 - 115,484,645
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik
Downstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348P10.T7 (MSMg01no348_p10.b1)MSMg01-348P10.TJ (MSMg01no348_p10.g1)
ACCAG460933AG460934
length731730
length of high quality
(start - end)
208 (135 - 342)378 (69 - 446)
definitionCHROMAT_FILE: MSMg01no348_p10.b1 PHD_FILE: MSMg01no348_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:26 2005CHROMAT_FILE: MSMg01no348_p10.g1 PHD_FILE: MSMg01no348_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:27 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCCAAAGAGGATCCGCGGAATTCTGT
TTTCCTGAAGACTTGGTCCACAAGGGATGTAGGGGATATGAAGCTATAGA
AGGCAACTACTAACTATAATGATGAACGTATAAAAAAGTCATGTAGAAAC
CTATTATCTCATAACCTGAATAAAAACACACAGGGAATTATCCTACAAAG
CTAGGTAATGCTGCTGCTAGAACATTGGTTTACTAAGCAAAATTCCCTGT
CCAGGGTGTGGAATACCTCCCCAGATTTTGGTCAGGGAGGCTCTATACAT
CCCATCAAATATCACAGGTTCTTATCAATTCTCTTACTGGTCTGCCAGAC
TAGAGAATAAAACCCCTTTTCTGATCTTCTCCTTCAATGTAGTATACTTG
AAATGCTCATAGAAGCCAGGAAATGACTAAGGAACTGTAAGGAGGGGCGT
ACAACACAGATGCAAAATGATAAAAGGTAATAGTGGGACAGGAAGAAATA
ATTGCATTGTGTTATGCTAAGGCAGTACAGATAGAGAATTATGGCATGAT
ATAGTCAGTAATAAAGGCCTCCTGTTGCCCCCGTTCTTTGAAAGATAACA
TGCCCCACCACTAGGTTAATGCCCCCGTTCTCCAACTTTCCATATGTATT
TGTTTGACCTGTTTTTCTTATGTCTATATCCTATTTTTTGGATAACCATT
TGCCCAACTTTTCGACCCATTAAATATCTCA
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAAGGTAGGGAAATGTCTCTGTTTTATATTG
AATGTTGCTTGAAACAAATGGGCTGTCAGCCAGGGGTGTGGACATCCCTT
TCCCTGTGAACCTTTCCCTGTTAATGACATATTTTGTAATGGGATTTGAC
ATGTAATACAAACATAGTTCCCAATGCATGTATTATCCATCTCAGTTACT
TACAATACTAAAATGAGTTTCTCTGTTTTTCCCATTTTAAAATCTGTACT
GTCTTACCAATAGCCACCCACTGATTTTCAAATGTTAATGATATGTGTTG
GTTGACTGTATAATACCAATTTTCATTTTTAGTACCTAGGGACATTTTCA
TTGGAGCGTAGATTGCTCAAAAATACTTGATGTACAATAAAACTAGATGT
CTACTCATAACATTTGTCAAGCTTTTCTTTGAATGCATAAAACAATACAG
ATGGAAAATTTTAAATTCTACTTGATCTATTTTACGACAATGTCCACTGC
AATATTTACCCTTACNCTTTATGATGCTCATATTCTCTCATCCGCTTATT
ACTTTTGTACTTTTGTCCTAGCTCTATTTGCTACCGTTGTATCCTGTTTT
TGTTTCTTCCTTCTGACTGAGGTAATTACCCTGCCCAATACTCATGTCTG
CCCTATTATTTTGCCTAACTCCATTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_p10.g1 MSMg01no348_p10.g1 CHROMAT_FILE:
MSMg01no348_p10.g1 PHD_FILE: MSMg01no348_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:27 2005
         (378 letters)



>mm_chr13_115484068_115484845
          Length = 778

 Score =  692 bits (358), Expect = 0.0
 Identities = 373/378 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggtagggaaatgtctctgttttatattgaatgttgcttgaaacaaatgggctgtca 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 caaaggtaggaaaatgtctctgttttatattgaatgttgcttgaaacaaatgggctgtca 519

                                                                       
Query: 61  gccaggggtgtggacatccctttccctgtgaacctttccctgttaatgacatattttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gccaggggtgtggacatccctttccctgtgaacctttccctgttaatgacatattttgta 459

                                                                       
Query: 121 atgggatttgacatgtaatacaaacatagttcccaatgcatgtattatccatctcagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atgggatttgacatgtaatacaaacatagttcccaatgcatgtattatccatctcagtta 399

                                                                       
Query: 181 cttacaatactaaaatgagtttctctgtttttcccattttaaaatctgtactgtcttacc 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 398 cttacaatactaaaatgagtttctttgtttttcccattttaaaatctgtactgtcttacc 339

                                                                       
Query: 241 aatagccacccactgattttcaaatgttaatgatatgtgttggttgactgtataatacca 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 338 aatagccacccactgattttcaaatgttaatgatatgtgttggctgactgtataatacca 279

                                                                       
Query: 301 attttcatttttagtacctagggacattttcattggagcgtagattgctcaaaaatactt 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 278 attttcatttttagtacctagggacattttcattggagtgtagattgctcaaaaatactt 219

                             
Query: 361 gatgtacaataaaactag 378
           |||| |||||||||||||
Sbjct: 218 gatggacaataaaactag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)