Query= MSMg01no349_a08.b1 MSMg01no349_a08.b1 CHROMAT_FILE:
MSMg01no349_a08.b1 PHD_FILE: MSMg01no349_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:31 2005
(639 letters)
>mm_chr13_47279272_47280305
Length = 1034
Score = 1166 bits (603), Expect = 0.0
Identities = 625/635 (98%), Gaps = 5/635 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatgcatccttagctgctggcctctcaatgtatgttttagatcttccttcctcg 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgcatccagagctgctggcctctcaatgtatgttttagatcttccttcctcg 264
Query: 65 ccaaggttggaattctgctaacacggcaatattgtccagtttgctgtggcaggacacctg 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 ccaaggttggaattctgctaacacggcaatattgtccagttagctgtggcaggacacctg 324
Query: 125 gcactttgtcccaagtcagtgttaaaaaataaaatccaaaaattttatgtcatctttcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcactttgtcccaagtcagtgttaaaaaataaaatccaaaaattttatgtcatctttcta 384
Query: 185 tttttggccacctccttgctccccaaaggtgctgacaagagaaaaaaagtggggagcttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttggccacctccttgctccccaaaggtgctgacaagagaaaaaaagtggggagcttg 444
Query: 245 acttcatggtgaatttattttgggaagtgaggctgggatggaacttagttgcctagcccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttcatggtgaatttattttgggaagtgaggctgggatggaacttagttgcctag---- 500
Query: 305 tcccccccccccccccccaggttctggtgactggtgtactggtttctgtgtgactccagg 364
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 -cccccccccctccccccaggttctggtgactggtgtactggtttctgtgtgactccagg 559
Query: 365 attccctcatggtaccgagttaccaaatggtaaagccactgtggctgggtcgctcagagt 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 attccctcatggtaccgagttaccaaatggtaaagccgctgtggctgggtcgctcagagt 619
Query: 425 actaaatgaggagctgcttaatcagggcaccctggtaagatcatattgttgagttcacaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actaaatgaggagctgcttaatcagggcaccctggtaagatcatattgttgagttcacaa 679
Query: 485 aggctctgattgctctgagaccgaagccatcctctcactctgtaagaaaacagcctataa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggctctgattgctctgagaccgaagccatcctctcactctgtaagaaaacagcctataa 739
Query: 545 gaagcaagagatctacatgaaggcttgctggttccaagagagttagagcagatcggatgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaagcaagagatctacatgaaggcttgctggttccaagagagttagagcagatcggatgt 799
Query: 605 ccttcgctctctccttgaggaagatgatgttcgca 639
|||||||||||||||||||||||||||||||||||
Sbjct: 800 ccttcgctctctccttgaggaagatgatgttcgca 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1034
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1024
Effective search space: 644096
Effective search space used: 644096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_a08.g1 MSMg01no349_a08.g1 CHROMAT_FILE:
MSMg01no349_a08.g1 PHD_FILE: MSMg01no349_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:31 2005
(524 letters)
>mm_chr13_47437354_47438278
Length = 925
Score = 938 bits (485), Expect = 0.0
Identities = 515/525 (98%), Gaps = 1/525 (0%)
Strand = Plus / Minus
Query: 1 agcatcacatttgaaatatcagggaagaggcataaacaaaaaggggtaccaggttctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 agcatcacatttgaaatatcagggaagaggcataaacaaaaaggggtaccaggttctgag 666
Query: 61 gtggcatgccaaggccccaaatgctgagagaaaatttgtgcacagcaggaagcaagcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gtggcatgccaaggccccaaatgctgagagaaaatttgtgcacagcaggaagcaagcact 606
Query: 121 ccagatgggcaggagggagcttgtgccactccatcttccaccacctgctccccacttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ccagatgggcaggagggagcttgtgccactccatcttccaccacctgctccccacttcaa 546
Query: 181 caaggaaaacaaaacaaactctttggggaaattatgtctcaccatgtgataaggttcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caaggaaaacaaaacaaactctttggggaaattatgtctcaccatgtgataaggttcaag 486
Query: 241 attctcttgtcccctgcactctctgtcaggagcaccggagccaggctgatgggggagtga 300
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 485 attctcttgtcccctgcactctctggcaggagcaccagagccaggctgatgggggagtgg 426
Query: 301 agagtcatgatgagaacctaacaagagagaccaaactgcatgggcaaagctctgcagagt 360
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 425 agaatcatgatgagaacctaacaagagagaccaaactgcatgagcaaagctctgcagagt 366
Query: 361 gttgcctgcctttcccacgtgaacccagggattgtctgacaaaagggaagacaggttggg 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gttgtctgcctttcccacgtgaacccagggattgtctgacaaaagggaagacaggttggg 306
Query: 421 cgaatgaacaaatccacgtgactgaaaaacctctaccttgcaagctgaagccatcatgtg 480
||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 305 cgaatgagcaagtccacgtgactgaaaaacctctaccctgcaagctgaagccatcatgtg 246
Query: 481 ctatggtc-aaaacgttcataaattagaccaagccataatgcttc 524
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctatggtcaaaaacgttcataaattagaccaagccataatgcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
