BAC Information

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BAC

Clone NameMSMg01-349G06
Chromosome13 (Build37)
Map Location 47,070,802 - 47,169,106
singlet/doubletdoublet
Overlap geneLOC544928, Nhlrc1, Tpmt, Aof1
Upstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
Downstream geneDek, LOC100039761, Ibrdc2, 4931429P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349G06.T7 (MSMg01no349_g06.b1)MSMg01-349G06.TJ (MSMg01no349_g06.g1)
ACCAG461258AG461259
length733740
length of high quality
(start - end)		606 (40 - 645)487 (80 - 566)
definitionCHROMAT_FILE: MSMg01no349_g06.b1 PHD_FILE: MSMg01no349_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:59 2005CHROMAT_FILE: MSMg01no349_g06.g1 PHD_FILE: MSMg01no349_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,070,802 - 47,071,404)(47,168,656 - 47,169,106)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTCTTCTGTTAAGAAGAAAGAAGTCTTTGTCCTTACAGCATTAGCTATTG
TCTAGGTTTGACATTCAGAAGTCCCACTTGAAAGGCATTTCAGAGATGTC
TGGCGCTACGGCCATCTAAGAGAAAACTAAACTAGGTTTAAATTCTCCCC
CTGCAAATCTAGAAGGTCTTAGTTTTGAAAATAAAATAGTTTTGAGGCTT
CCCTTTTTAAAAGTTCTTGAAAGACAGAGACAGAGAGAGGGGGAGGGGAA
GAGGAGACGGAATGGGAGGTGAGAGGGAGACAGAGATGGACAGACAGACA
GATGATGAAAACAGGACTGGCTGTAAAGATGGGACTATCAGCAGAAGTTC
CAGAAGTTTGGAAGAGGGTCGTGAGTAACAAGTGCGATCAAAATGTATTA
TTTGGAAGTGTGAAAATGTCATAAGCCCATTATGTATAATTAATATCCTC
TAATGAAACAGCCGAAAACCCGCAGTTTGACAAGTTGGCCTTTGTGTGAT
TCTCTAGGAAGTCTTTCTTATCTTTGATAATTTCTTCCTCTCTTTAAGAG
AGAAGTTTTGTGTTTAGAATAATTGCCTTTGGCAGCCCCTCAGATGAACT
CTGGTACCCACAGACCATGTCCCAGGGTCTGTGGTTACGGAAGTTCTGCC
AACCTGTCTGTTGCTGTGACTAACGCTGCATAG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTGATCCCAGGAGCGAGC
AGACACCTGGGAAACAACACAAGGTGTTAGGAAGCCATAACGTAAACCCT
AAAGCTGCCCCTGAGGACATCGAAAGAGGCGTCAGGTGGGAGAAGCCACC
AAGGCATCAATCACCAAGGACACCGCCGTCTGGGGAAGGCAAACTATTTG
ACACATAGAGGGTCTAGACAGACATGGCGGCTCATGGCTTCAAGAATTCA
ACACCTGGAAAACTGAGGTACTGCAGAATATTACTATTTCAAAATAAATA
AAAGTAGACAGCACGTGAGGAACAGTACTGAGATTGTCCTCTGACCGACT
GTACACCCATGCACAGGACAAGTTGGGGAGGAAGGGTTAAACAGTCTGAG
CGAAGGTTCCTTTCCTTGATTTTTTTTTTATAGTTCATTTTATGCATCAG
CAATTCTGAGAAAGGCAAATTTTATAGAGATCAAACTGTATTTGACTAGC
CCCACAGGAAAACACACCAACTTGTTCTCTTCAACAAGGGCAGGAGGTGC
ATATAGGCCTAGACTCAACACTTCTGGTTGGAAAGGTTTCCACTCCCATT
GTAATGCATAGCGGTGCTGATGCAGGCCTGCCCTGTATACCCACATAGCT
TCTCGGCAGGTTCGTAGGGTGCTGGACTCCCCATGGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_g06.b1 MSMg01no349_g06.b1 CHROMAT_FILE:
MSMg01no349_g06.b1 PHD_FILE: MSMg01no349_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:59 2005
         (606 letters)



>mm_chr13_47070599_47071604
          Length = 1006

 Score = 1143 bits (591), Expect = 0.0
 Identities = 600/603 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcttctgttaagaagaaagaagtctttgtccttacagcattagctattgtc 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttcttcagttaagaagaaagaagtctttgtccttacagcattagctattgtc 263

                                                                       
Query: 64  taggtttgacattcagaagtcccacttgaaaggcatttcagagatgtctggcgctacggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taggtttgacattcagaagtcccacttgaaaggcatttcagagatgtctggcgctacggc 323

                                                                       
Query: 124 catctaagagaaaactaaactaggtttaaattctccccctgcaaatctagaaggtcttag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catctaagagaaaactaaactaggtttaaattctccccctgcaaatctagaaggtcttag 383

                                                                       
Query: 184 ttttgaaaataaaatagttttgaggcttccctttttaaaagttcttgaaagacagagaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttgaaaataaaatagttttgaggcttccctttttaaaagttcttgaaagacagagaca 443

                                                                       
Query: 244 gagagagggggaggggaagaggagacggaatgggaggtgagagggagacagagatggaca 303
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 gagagagggggaggggaagagaagacggaatgggaggggagagggagacagagatggaca 503

                                                                       
Query: 304 gacagacagatgatgaaaacaggactggctgtaaagatgggactatcagcagaagttcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gacagacagatgatgaaaacaggactggctgtaaagatgggactatcagcagaagttcca 563

                                                                       
Query: 364 gaagtttggaagagggtcgtgagtaacaagtgcgatcaaaatgtattatttggaagtgtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaagtttggaagagggtcgtgagtaacaagtgcgatcaaaatgtattatttggaagtgtg 623

                                                                       
Query: 424 aaaatgtcataagcccattatgtataattaatatcctctaatgaaacagccgaaaacccg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaatgtcataagcccattatgtataattaatatcctctaatgaaacagccgaaaacccg 683

                                                                       
Query: 484 cagtttgacaagttggcctttgtgtgattctctaggaagtctttcttatctttgataatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagtttgacaagttggcctttgtgtgattctctaggaagtctttcttatctttgataatt 743

                                                                       
Query: 544 tcttcctctctttaagagagaagttttgtgtttagaataattgcctttggcagcccctca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcttcctctctttaagagagaagttttgtgtttagaataattgcctttggcagcccctca 803

              
Query: 604 gat 606
           |||
Sbjct: 804 gat 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_g06.g1 MSMg01no349_g06.g1 CHROMAT_FILE:
MSMg01no349_g06.g1 PHD_FILE: MSMg01no349_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:59 2005
         (487 letters)



>mm_chr13_47168656_47169542
          Length = 887

 Score =  841 bits (435), Expect = 0.0
 Identities = 447/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtgatcccaggagcgagcagacacctgggaaacaacacaaggtgttaggaagccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 attgtgatcccaggagcgagcagacacctgggaaacaacacaaggtgttaggaagccata 392

                                                                       
Query: 61  acgtaaaccctaaagctgcccctgaggacatcgaaagaggcgtcaggtgggagaagccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acgtaaaccctaaagctgcccctgaggacatcgaaagaggcgtcaggtgggagaagccac 332

                                                                       
Query: 121 caaggcatcaatcaccaaggacaccgccgtctggggaaggcaaactatttgacacataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caaggcatcaatcaccaaggacaccgccgtctggggaaggcaaactatttgacacataga 272

                                                                       
Query: 181 gggtctagacagacatggcggctcatggcttcaagaattcaacacctggaaaactgaggt 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 271 gggtctagacagacatggcggctcattgcttcaagaattcaacacctggaaaactgaggt 212

                                                                       
Query: 241 actgcagaatattactatttcaaaataaataaaagtagacagcacgtgaggaacagtact 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 actgcagaataagactatttcaaaataaataaaagtagacagcacgtgaggaacagtact 152

                                                                       
Query: 301 gagattgtcctctgaccgactgtacacccatgcacaggacaagttggggaggaagggtta 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gagactgtcctctgaccgactgtacacccatgcacaggacaagttggggaggaagggtta 92

                                                                       
Query: 361 aacagtctgagcgaaggttcctttccttgattttttttttatagttcattttatgcatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  aacagtctgagcgaaggttcctttccttgattttttttttatagttcattttatgcatca 32

                                          
Query: 421 gcaattctgagaaaggcaaattttatagaga 451
           |||||||||||||||||||||||||||||||
Sbjct: 31  gcaattctgagaaaggcaaattttatagaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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