BAC Information

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BAC

Clone NameMSMg01-350B13
Chromosome13 (Build37)
Map Location 46,272,772 - 46,273,164
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667204, LOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik
Downstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350B13.T7 (MSMg01no350_b13.b1)MSMg01-350B13.TJ (MSMg01no350_b13.g1)
ACCAG461792AG461793
length782790
length of high quality
(start - end)
368 (53 - 420)396 (81 - 476)
definitionCHROMAT_FILE: MSMg01no350_b13.b1 PHD_FILE: MSMg01no350_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:55 2005CHROMAT_FILE: MSMg01no350_b13.g1 PHD_FILE: MSMg01no350_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTAGAAAGTCTCTAATTTCTTTATTTCTTCTCCAACCAA
GTTTTCATTGAGTATAGAGTTGTTCAGTTTCTATGAGTACATGGGTTTTC
TGTTGTTTTTGTTGTTATTGATGACCAGTCTTAGTCTGTGGTGATCTGAT
AGAGTGCATGGAATTATTTGAATTTTCTTATATCTGCTGAGTCTTGTTTT
GTGTCTAATTATATGATCAATTTTGGAGAAGGTACCATGAGTTGCTGAGA
AAATTATATATATATATATATGTATATATATATATATCTTTAATATTAAA
ATATATATATTTGTTTTAGGGTGAAATGTTCTGTAGATGTTTGTTAAATC
CATTTGGTTCATAACTTCTGCCCCCCCCACTGTGTCTCTGTTTAGTTATT
GCTTCAATTACCTGTTCACTGGTGAGAGTGTGGAGATGATATCTTCCCTT
TGTTATTGCCTTTTACTCCCTTGTCCTTTTTTTCTCTTTATAACCCTTTT
TTTTTCTTTTTTATTTCCGCTTTTTTTCCCTTTTTTTTTCCCTTTTTTCT
TTTTTCCTTTCCTCTCCTTTTCTTCCCCTCTTTTTTTTTTCATCTCTCTC
CACATCCCTCTTTATTTTATTCTTTCTTCTCTTTTTCCTTTCTTTTTTCT
CCTCTTTCCCCTTTTCTTTCCCTTCTTCCTTTTTTCTTTTCTTCCCCTTT
TTCATCTTTTTTTTCTCTCTCCCTTTTCTCTT
TTTTCCTATGATAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGTGAGGGTCCCATTCGT
CCTATCTCCCTCCTAGAACCTACTTCTGGGGTAATGGGCAGATGGGTTTC
TCCCTGGATTTCAGTACAAGCAAGTCTATTCTGATGCAATCTGTACACCT
GCACACCCATGTGCACATGCATGTGTGTGCATCTCTGCCCTCATCTCTAG
ATAGGGAAGAAAGAAGAGAGAAGACAAACTGAGGGTAGATGCAGTCAAGA
AGGCAGCAAAGGGAAACTGAGAAGCTACTGGAAGCAGAGGGCACAAGAAA
GACGGAACGAGGAACTATGACAACAGATGAAGGCTGGCTGCAGACCACTG
TGGTTTGAATATGGAATACTCCCATAAGCTTGTATGTTTCAATGCTCATT
CCCAAGCTGGTGGTGCTGTACTCGGGAGCATGATAGAATCTTTAGGAAGC
GGAGCCTTGGAGGGGAAAGAACTTCTTCAAGGAAGGTTTTTCCAGGGTTT
TATGGCCTGGCCCCCCTTTTGAATTTTCCTTCTTTCCTTTCTCTCCCTCC
CTCTTCTTTCTCCCCCCATTTCCTGTTGTGGGGGGAAAAATATTTTTTTT
TTCTTGGTTCTGTGCCCAAGTTTTTCCGTCTCTATTTTCTCGTTTTTTTC
CCTCTTCGTGTTTTTCTTTTATTACCCCAACATTCTTTATGATTTTATAT
ACCCTCTCTTTCTCCATACTTATTTCCTTTTCATCATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_b13.g1 MSMg01no350_b13.g1 CHROMAT_FILE:
MSMg01no350_b13.g1 PHD_FILE: MSMg01no350_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:55 2005
         (396 letters)



>mm_chr13_46272572_46273367
          Length = 796

 Score =  721 bits (373), Expect = 0.0
 Identities = 388/393 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggtgagggtcccattcgtcctatctccctcctagaacctacttctggggtaatgggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggtgagggtcccattcgtcctatctccctcctagaacctacttctggggtaatgggca 260

                                                                       
Query: 61  gatgggtttctccctggatttcagtacaagcaagtctattctgatgcaatctgtacacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgggtttctccctggatttcagtacaagcaagtctattctgatgcaatctgtacacct 320

                                                                       
Query: 121 gcacacccatgtgcacatgcatgtgtgtgcatctctgccctcatctctagatagggaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gcacacccatgtgcacatgcatgtgtgtgcatctctgccctcatctctagataggaaaga 380

                                                                       
Query: 181 aagaagagagaagacaaactgagggtagatgcagtcaagaaggcagcaaagggaaactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaagagagaagacaaactgagggtagatgcagtcaagaaggcagcaaagggaaactga 440

                                                                       
Query: 241 gaagctactggaagcagagggcacaagaaagacggaacgaggaactatgacaacagatga 300
           ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct: 441 gaagctactggaagcagagggcacaagaaagacggaatgaggaattgtgacaacagatga 500

                                                                       
Query: 301 aggctggctgcagaccactgtggtttgaatatggaatactcccataagcttgtatgtttc 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggctggctgcggaccactgtggtttgaatatggaatactcccataagcttgtatgtttc 560

                                            
Query: 361 aatgctcattcccaagctggtggtgctgtactc 393
           |||||||||||||||||||||||||||||||||
Sbjct: 561 aatgctcattcccaagctggtggtgctgtactc 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)