Query= MSMg01no350_d01.b1 MSMg01no350_d01.b1 CHROMAT_FILE:
MSMg01no350_d01.b1 PHD_FILE: MSMg01no350_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:02 2005
(576 letters)
>mm_chr13_19671288_19672263
Length = 976
Score = 1067 bits (552), Expect = 0.0
Identities = 567/572 (99%)
Strand = Plus / Plus
Query: 5 gaattcataatgatctagctaatgctggcaaaattctgagctttgggaaaaaaccccatc 64
|||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataacgatcaagccaatgctggcaaaattctgagctttgggaaaaaaccccatc 264
Query: 65 agaagtagaaatatatacatgcattgaatgtgcaagacagatgatctcacttttggagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaagtagaaatatatacatgcattgaatgtgcaagacagatgatctcacttttggagaa 324
Query: 125 tactgtctacactagtgaatgaagccttgagaaatcttttaccatccctaataatgcaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactgtctacactagtgaatgaagccttgagaaatcttttaccatccctaataatgcaat 384
Query: 185 aactgagtgagctgaagagacaggaattcaccctatgtactagggcttggttgaaagaaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 aactgagtgagctgaagagacaggaattcaccctatgtactagggcttggttgaaagaga 444
Query: 245 aagtcctctaaaaagtacagtaatgactttcctctgcatagcaatccgtacacatctgcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtcctctaaaaagtacagtaatgactttcctctgcatagcaatccgtacacatctgcc 504
Query: 305 tgcctttggagatgagcatgagacctgtgctttcagggagagtcatgaaatgttcaagaa 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcctttggagatgagcatgagaactgtgctttcagggagagtcatgaaatgttcaagaa 564
Query: 365 tgtggaataatttcagtaagaaggagaggggactcagggcgcaaaggcaggaaaagacaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtggaataatttcagtaagaaggagaggggactcagggcgcaaaggcaggaaaagacaa 624
Query: 425 ggccaaaggccaaaggctatcactagccaagccagatcagatgggagaacctcaaggagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggccaaaggccaaaggctatcactagccaagccagatcagatgggagaacctcaaggagg 684
Query: 485 agtcaggaatagtggtgagataaagggtcaggacaaaccagaaggcattgtctgcagatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtcaggaatagtggtgagataaagggtcaggacaaaccagaaggcattgtctgcagatg 744
Query: 545 cacactgtcaccaggtggttttgggtttctgg 576
||||||||||||||||||||||||||||||||
Sbjct: 745 cacactgtcaccaggtggttttgggtttctgg 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_d01.g1 MSMg01no350_d01.g1 CHROMAT_FILE:
MSMg01no350_d01.g1 PHD_FILE: MSMg01no350_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:02 2005
(519 letters)
>mm_chr13_19692701_19693619
Length = 919
Score = 948 bits (490), Expect = 0.0
Identities = 511/518 (98%), Gaps = 1/518 (0%)
Strand = Plus / Minus
Query: 1 actcagcttccatttggagaggaaggggaggggaaggagcagaaatgtctattttacctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 actcagcttccatttggagaggaaggggaggggaaggagcagaaatgtctattttacctc 458
Query: 61 ctttgaaggtcagtaaccttttacctactcgggtaaagacacatgtgtgagccttcacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctttgaaggtcagtaaccttttacctactcgggtaaagacacatgtgtgagccttcacat 398
Query: 121 ctagttgtgatggcaagcaggaagcagtaacagctcataaaaggagactttcctagaaca 180
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctagttgtgatggaaagcgggaagcagtaacagctcataaaaggagactttcctagaaca 338
Query: 181 atccctctctatggaccatttgaatgacagtgaattgaaaactagctcacaatatacata 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atccctctatatggaccatttgaatgacagtgaattgaaaactagctcacaatatacata 278
Query: 241 cacaagataaatgggattcttaaaagtactgtgatgtcccttatgaatattctgtaactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cacaagataaatgggattcttaaaagtactgtgatgtcccttatgaatattctgtaactg 218
Query: 301 ttgattaaaagtttctcactagcaaatatatcccaatagtacataaaaaaaatacagcag 360
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 217 ttgattaaaagtttctcactagcaaatatatcccaatagtacatcaaaaaa-tacagcag 159
Query: 361 aatcaagaaacatttatcagggggatgcaaggatagtttctttttttaaaatcttaatac 420
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 158 aatcaagaaacgtttatcagggggatgcaaggatagtttcttttttttaaatcttaatac 99
Query: 421 acctaagacaaggtatacatgagaatattcttagtttgatggaaagacaattgatcaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 acctaagacaaggtatacatgagaatattcttagtttgatggaaagacaattgatcaaat 39
Query: 481 tcaataaacatggtttatagaaggtggtttgcaggaaa 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 tcaataaacatggtttatagaaggtggtttgcaggaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|