Query= MSMg01no350_e04.b1 MSMg01no350_e04.b1 CHROMAT_FILE:
MSMg01no350_e04.b1 PHD_FILE: MSMg01no350_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:08 2005
(519 letters)
>mm_chr13_101546839_101547760
Length = 922
Score = 565 bits (292), Expect = e-165
Identities = 325/340 (95%), Gaps = 9/340 (2%)
Strand = Plus / Minus
Query: 185 taggcttgtttagtgttgaaacttcatgggtgtagcttccctgacattgaggagacagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 taggcttgtttagtgttgaaacttcatgggtgtagcttccctgacattgaggagacagaa 863
Query: 245 tttcaagcagtctttctagtcccctggcgcctaatatctgtgcctcctctccagtgttct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tttcaagcagtctttctagtcccctggcgcctaatatctgtgcctcctctccagtgttct 803
Query: 305 gcagtgcaggcgttgttgataacatgagctgggctggggcagggcttgttctgcatttga 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tcagtgcaggcgttgttgataacatgagctgggctggggcagggcttgttctgcatttga 743
Query: 365 ttgtggttttctgtggac------ataaacattccgaattcggtgcttgtgtgagctgcc 418
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 742 ttgtggttttctgtggacataaagataaacattccgaattgggtgcttgtgtgagctgcc 683
Query: 419 tctccaggtggcctgaacctcaatcc-tc--ctctctcctaaatgctggaatgtttcact 475
||||||||||||||| |||||||||| || ||| ||||||||||||||||||||| |||
Sbjct: 682 tctccaggtggcctggacctcaatccttcttctccctcctaaatgctggaatgttttact 623
Query: 476 cttcctgcctctgctttgcttctgtgatacggaggtggtg 515
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 622 cttcctgcctctgctttgcttctgtgatacggagatggtg 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 922
Length adjustment: 10
Effective length of query: 509
Effective length of database: 912
Effective search space: 464208
Effective search space used: 464208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_e04.g1 MSMg01no350_e04.g1 CHROMAT_FILE:
MSMg01no350_e04.g1 PHD_FILE: MSMg01no350_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:08 2005
(471 letters)
>mm_chr13_101379767_101380637
Length = 871
Score = 797 bits (412), Expect = 0.0
Identities = 454/470 (96%), Gaps = 4/470 (0%)
Strand = Plus / Plus
Query: 1 acacctccccaatgatgaaccatcaaagccagatgagcttcatgctcgccatgactctgg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacctccccaacgatgaaccatcaaagccagatgagcttcatgctcgccatgactctgg 260
Query: 61 catttgatgcttgattttaacgcaaacaccgtcaccaccatcaccacattcttttccggc 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttgatgcttggttttaacgcaaacaccgtcaccaccatcaccacattcttttccggc 320
Query: 121 tttgctttttgagactgggatcccaggctgtcctcaaactacgtggccccggatggactt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tttgctttttgagactgggatcccaggctgtcctcaaactacgtggccccggctggactt 380
Query: 181 gaactctcggtcttcctgcttcaacttcccaagggcagaagttactggtgtaagccacta 240
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gaactcgcggtcttcctgcttcaacttcccaagggcagaagttacgggtgtaagccacta 440
Query: 241 ctcccattagccaaactcctttgtatgtgtgcgggtgtctgcatctgatgatgtgggttc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcccattagccaaactcgtttgtatgtgtgcgggtgtctgcatctgatgatgtgggttc 500
Query: 301 ctaagcctccataccatacatgtggaggttagagggcagcctaaggtgttatccctcagg 360
||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||
Sbjct: 501 ctaagcctccataccatacatgtggaggtcagagggcagcctagggtgttagccctcagg 560
Query: 361 tatcctactttttgtttgagacgagggcttcactttcaagcttcaggcatcctcctgcct 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taccctactttttgtttgagacgagggcttcactttcaagcttcaggcatcctcctgcct 620
Query: 421 cctcctgccagcactgggagtagaggtgcatgccaacttttttttttttt 470
|||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct: 621 cctcctcccagcactgggagtacaggtgc----caacttttttttttttt 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
