Query= MSMg01no350_f14.b1 MSMg01no350_f14.b1 CHROMAT_FILE:
MSMg01no350_f14.b1 PHD_FILE: MSMg01no350_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:15 2005
(449 letters)
>mm_chr13_115169578_115170426
Length = 849
Score = 847 bits (438), Expect = 0.0
Identities = 444/446 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttcattgtacttaaagatatctagatgaaatttataccttttgctttattagt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggaattcttcattgtacttaaagatatctagatgaaatttataccttttgctttattagt 590
Query: 64 ttgaaattaattttaatatccgtattacacataagtttttgagaaataaaatatagccca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttgaaattaattttaatatccgtattacacataagtttttgagaaataaaatatagccca 530
Query: 124 taataccacattgactaagagcttgtgtttatagaaccttttaaacatatgaaacttaaa 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 529 taataccacattgactaagagcttgtgtttatagaaccttttaaaaatatgaaacttaaa 470
Query: 184 atactttgtaataattacttttgggtagtgagaaaagagttagtttttaatcaaaagagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atactttgtaataattacttttgggtagtgagaaaagagttagtttttaatcaaaagagt 410
Query: 244 ggcttctgccttgataggttaactctaaaagtatagttcatagagtcatacttgagtcat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggcttctgccttgataggttaactctaaaagtatagttcatagagtcatacttgagtcat 350
Query: 304 aacttgaattggaagaaaattattgtagcttgtcagccctgtatttaatttaagaatctc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aacttgaattggaagaaaattattgtagcttgtcagccctgtatttaatttaagaatctc 290
Query: 364 tgctgaaaatcttagtttctggtaactctagaaacagtttttttcactgtgacaaagtgc 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgctgaagatcttagtttctggtaactctagaaacagtttttttcactgtgacaaagtgc 230
Query: 424 cctctagaaatgccaagggggacaag 449
||||||||||||||||||||||||||
Sbjct: 229 cctctagaaatgccaagggggacaag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_f14.g1 MSMg01no350_f14.g1 CHROMAT_FILE:
MSMg01no350_f14.g1 PHD_FILE: MSMg01no350_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:15 2005
(387 letters)
>mm_chr13_115082365_115083151
Length = 787
Score = 710 bits (367), Expect = 0.0
Identities = 381/387 (98%), Gaps = 3/387 (0%)
Strand = Plus / Plus
Query: 1 ccacagtcctacttaactcataaaatacgtggaaccccagcaaaccatgacacagaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacagtcctacttaactcataaaatacgtggaaccccagcaaaccatgacacagaaaga 260
Query: 61 agcctactttaagaaaagtgattccagagttctacaggcgtctaaggaataatccctcgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 agcctactttaagaaaagtgattccagagttctacaggcgtctaaggaataatcccttgt 320
Query: 121 gacctgaaccgccaaaaatctctcaagcaaggattagcaataaggagctaaatagaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacctgaaccgccaaaaatctctcaagcaaggattagcaataaggagctaaatagaaacc 380
Query: 181 accaccaccaccaccaccaccaccctaggcaggctgttggtaccagtaatactcacctgt 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaccaccaccaccaccacc---ctaggcaggctgttggtaccagtaatactcacctgt 437
Query: 241 ggatccactgacttacaaattcatttgtggactctaagtctatgcatccgtcctcatgcg 300
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 438 ggatccactgacttacaaattcatttgtggcctctaagtctatgcatccatcctcatgcg 497
Query: 301 atcacttataatgtacacagagggaagcagacattgagtctcctcgtgactgaggtcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atcacttataatgtacacagagggaagcagacattgagtctcctcgtgactgaggtcaag 557
Query: 361 cgacgcaccctccctgtcttcttggtt 387
|||||||||||||||||||||||||||
Sbjct: 558 cgacgcaccctccctgtcttcttggtt 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
