BAC Information

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BAC

Clone NameMSMg01-350O10
Chromosome13 (Build37)
Map Location 117,541,957 - 117,542,296
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623174, Isl1, EG668276, Gm280, LOC100041169
Downstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807, Hcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350O10.T7 (MSMg01no350_o10.b1)MSMg01-350O10.TJ (MSMg01no350_o10.g1)
ACCAG462401AG462402
length798780
length of high quality
(start - end)
---340 (82 - 421)
definitionCHROMAT_FILE: MSMg01no350_o10.b1 PHD_FILE: MSMg01no350_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:59 2005CHROMAT_FILE: MSMg01no350_o10.g1 PHD_FILE: MSMg01no350_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAAGGAGCC
GCGGAATTCTTGATTTTCCCTAAATTCTTTCCAGTCCATAAACTTGATTT
ACTAAGAAGCCATTAGATCTGGTGCACTAATGCACCTGGTTTAGATCCTT
GATCAGGATGCAGCCCACGTCTTTCTCCTTCCGTTTACTGAATTTCCATT
TTCATCCCATGCCAGCAGTTATTGAGTAATGTTCTAAAGGAAAACACTTT
TAAAAGTCCCTGTGTCCGCTTCCTTTTCTCTGGTGCCGGAAGACTTCTGT
GATGTCTGGCCCTGCTCATATCTTATGTCTTTAGGATTGTCATCAGCTTT
TATGACATTATACCAAGGTAACCTTGTCGAAGATATGAATTAAGCATGGC
TTGTATTTGAATGATTAATAAACCCCCTCTCTCTTTCGTCTCATATGTTG
ACTCTACATGCTTCCCATATATGTAAAAGCTCTTTCTTTATTTCTTAACT
CGCTTTCATTCTTGTCTTTTTCACTGCTTCTTCCCTACCTACTTAGTCTT
TCTCTTAATTCACCAATTACTTACCGTTCATTATCTTCCTTTCTTTCACT
CCAGCGTTATTCCTTTACTCTTCCGTATACTTTTATTTAAGTATGCTCCC
CTCTTGTTCTTCCGGTTTGTCTTCTTTTTCATACTGTAACCTTCATTACC
TATATTCTCTTCTTACCACGATTTTTTTTTCCTCACCTCCCCTACTCCTT
CACACCATCTTCATCCTTTATATCCATTCTATTTTCTTCCCCCTATTN
TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATATATGACAACCCACTT
AAGAATTATTGCTTCTTGGGCCAACAAGATGGCTCAGCAGGGAAAGGTGC
TTCCTCAAAGACCTTCAGTACCCATCTCCACAACGTTTTCCTCTTACTTC
CCATGAATGCTGACCAATTTACTCACAGGTATACACACATACATATAATG
CACACACAAAAATGATAATAAAGAATTATATCTTTGGGGCTGGAGAGATA
GCTCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAAGTCATGAATTCAAT
TCCTAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCCAATGA
CCTCTACTCATGTGTTTGAAGAGACAGTGTATTCACATACAAAAAATAAA
TAAATAAATCCTAGAAAAAGAATTGTGTCTTTTTGATATAGATTTTTTAT
AAGATAGATTTTGCTACATAGCCCTGTGTGACCTCAGACTTGTGATTCTC
ACTCCTCAAGTTTCCAAGCATTGGAATTATAGACAGTCATAACACACAAG
TATTTCAGAATTTGCACGCGAATAGCAATGTTGATACTTAATACGTATGT
CCGTCAAAATTCTTTTCACTCATTTTCCTAATTAATTCCATCTTACCTTC
CCATCTCTTATTATCTCCTCTTTCATTTTATCTTTCCCTCTCATCAATGG
TTTGTATATTTATCTCTTACCACTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_o10.g1 MSMg01no350_o10.g1 CHROMAT_FILE:
MSMg01no350_o10.g1 PHD_FILE: MSMg01no350_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:59 2005
         (340 letters)



>mm_chr13_117541757_117542496
          Length = 740

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatatgacaacccacttaagaattattgcttcttgggccaacaagatggctcagcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatatgacaacccacttaagaattattgcttcttgggccaacaagatggctcagcagg 260

                                                                       
Query: 61  gaaaggtgcttcctcaaagaccttcagtacccatctccacaacgttttcctcttacttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaggtgcttcctcaaagaccttcagtacccatctccacaacgttttcctcttacttcc 320

                                                                       
Query: 121 catgaatgctgaccaatttactcacaggtatacacacatacatataatgcacacacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgaatgctgaccaatttactcacaggtatacacacatacatataatgcacacacaaaa 380

                                                                       
Query: 181 atgataataaagaattatatctttggggctggagagatagctcagaggttaagagcactg 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 atgataataaagaattatatctttggggctgaagagatagctcagaggttaagagcactg 440

                                                                       
Query: 241 actgctcttccagaagtcatgaattcaattcctagcaaccacatggtggctcacaaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgctcttccagaagtcatgaattcaattcctagcaaccacatggtggctcacaaccat 500

                                                   
Query: 301 ctttaatgagatccaatgacctctactcatgtgtttgaag 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttaatgagatccaatgacctctactcatgtgtttgaag 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)