Query= MSMg01no351_a21.b1 MSMg01no351_a21.b1 CHROMAT_FILE:
MSMg01no351_a21.b1 PHD_FILE: MSMg01no351_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:13 2005
(545 letters)
>mm_chr13_20429458_20430402
Length = 945
Score = 671 bits (347), Expect = 0.0
Identities = 388/411 (94%), Gaps = 16/411 (3%)
Strand = Plus / Minus
Query: 5 gaattctcaatctaattctaacaactcacaaaaagtatcgtgaaggaagttggtgaggag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 411 gaattctcaatctaattctaacaactcacaaaaagtatcgtgaaggaagttggcgaggag 352
Query: 65 aaaccctctataacctaagagtcatcacttttgcttgaattttacactaggacccttaaa 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaaccctctataacccaagagtcatcacttttgcttgaattttacactaggacccttaaa 292
Query: 125 gttttcttctatcaatagttttttcttggccatataatctgctcactaagtacagtatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gttttcttctatcaatagttttttcttggccatataatctgctcactaagtacagtatag 232
Query: 185 tactggtattcagagggtccttataatgaaagaaagagaaagaggagagaaaggaatgga 244
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 231 tactggtattcaaagggtccttataatgaaagaaagagaaagaggggagaaaggaatgaa 172
Query: 245 gggagacagaaagggatgcagagagggagaataagggagagagggggagagaga-a---- 299
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 171 gggagacagagagggatgcagagagggagaataagggagagagggagagagagagagaga 112
Query: 300 -----------agagagagagagagagagagaagcaattctctgcatacttcaataacct 348
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gagagagagagagagagagagagagagagagaagcaattctctgcatacttcaataacct 52
Query: 349 ctagacttcttgtattatctaatatgtcaatgatatgaaatgatgttatat 399
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 ctagacttcttgtattatctaatatgtcaatgatatgaaatgatgttatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_a21.g1 MSMg01no351_a21.g1 CHROMAT_FILE:
MSMg01no351_a21.g1 PHD_FILE: MSMg01no351_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:13 2005
(458 letters)
>mm_chr13_20305951_20306806
Length = 856
Score = 775 bits (401), Expect = 0.0
Identities = 444/459 (96%), Gaps = 4/459 (0%)
Strand = Plus / Plus
Query: 1 tctgcttgccttgtgatgaaacaggacatttgttaacattgctttgtagaggctgtgtta 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcttgcctcgtgatgaaacaggacatttgttaacattgctttgtagaggctgtgtta 260
Query: 61 gctacttgactatctattcgcagactttgtcaagcacaggactctggaagacatggtaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctacttgactatctattcgcagactttgtcaagcacaggactctggaagacatggtaag 320
Query: 121 ttccccagtgtcttccaggcactgtgctaagtgctaagtttgtgtacagttcaacagttc 180
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccccagtgtgttccaggcactgcgctaagtgctaagtttgtgtacagttcaacagttc 380
Query: 181 cagtcttcctgattctcga-agaccccagtcacttgattacaatggcagtaagggccaca 239
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcttcctgattctc-acagaccccagtcacttgattacaatggcagtaagggccaca 439
Query: 240 gaggaaaaatgtgcctgaacttaatgaagtcctcaacaagtgttatttaagtgaaagtct 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gacgaaaaatgtgcctgaacttaatgaagtcctcaacaagtgttatttaagtgaaagtct 499
Query: 300 aaagaaaacagagggtacttgtatggacaacagtaacatggctcagattagtagctggct 359
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 aaagaaaacag--ggtacttgtatggacaacagtaacatgactcagattagtagctggct 557
Query: 360 gtcaactctcatggcaaggctttggtaagagtattgccctgcatttgaggccagcctggt 419
||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct: 558 gtcaattctcatggcaaggccttggtaagagtagtgccctgcatttgagaccagcctggt 617
Query: 420 ctatatagcgagattatttcttagataaaacaagtcaaa 458
||||||||||||||| | |||||||||||||||||||||
Sbjct: 618 ctatatagcgagattctgtcttagataaaacaagtcaaa 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 856
Length adjustment: 10
Effective length of query: 448
Effective length of database: 846
Effective search space: 379008
Effective search space used: 379008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
