Query= MSMg01no351_b08.b1 MSMg01no351_b08.b1 CHROMAT_FILE:
MSMg01no351_b08.b1 PHD_FILE: MSMg01no351_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:15 2005
(567 letters)
>mm_chr13_24152775_24153752
Length = 978
Score = 986 bits (510), Expect = 0.0
Identities = 553/574 (96%), Gaps = 13/574 (2%)
Strand = Plus / Plus
Query: 5 gaattcaggaccaagacaaaaatctttgcctcactaggtatagtgggtacacagtgataa 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcaggaccaagacaaaaatctttgcctcacaaggtatagtgggtacacagtgataa 264
Query: 65 cccaagcattaagaaactagagctggagaatcaagagttccaggctagcctggactacaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccaagcattaagaaactagagctggagaatcaagagttccaggctagcctggactacaa 324
Query: 125 gacagccagtctcaaaacacacagtaaaaaccgtgtttctattgtgagctaaaattaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacagccagtctcaaaacacacagtaaaaaccgtgtttctattgtgagctaaaattaaag 384
Query: 185 ccctctcctttggccagagtgttttcatagcaatagaaaccagtcttagacctgtggctg 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctctccttttgccagagtgttttcatagcaatagaaaccagtcttagacctgtggctg 444
Query: 245 ggcctggggtggggg-------gtggagtcgtagctacacagtatcacagttcactttcc 297
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 ggcctggggtgggggttggggggtggagtggtagctacacagtatcacagttcactttcc 504
Query: 298 aaagtgtta-----tccagaataaaactgcaaagaggaatttaacaatcatgatgtggac 352
||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagtgttagttaatc-agaataaaactgcaaagaggaatttaacaatcatgatgtggat 563
Query: 353 caacttctgtgcaagttaacattagtgcagctgattattagtgagacacactgaccacag 412
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 564 caacttctgtgcaagttaacattagtgcagctgattattaatgagacacactgaccacag 623
Query: 413 cctgtggttttcagccttgtgaacaaaccatttaactaataactgctggagttgaagaca 472
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 cctgtggttttcagccttgtgaacaaaccgtttaactaataactgctggagttgaagaca 683
Query: 473 taggtggctcagtcatcttcaaagcacagagacctgagttcaaattccagaacccattta 532
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 684 taggtggctcagtcatcttcaaagcacagagacctgagttcaaatcccagaacccattta 743
Query: 533 aaaagcccagcatagtgatgtatagctataatct 566
||||||| ||||||||||||||||||||||||||
Sbjct: 744 aaaagccaagcatagtgatgtatagctataatct 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 978
Length adjustment: 10
Effective length of query: 557
Effective length of database: 968
Effective search space: 539176
Effective search space used: 539176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_b08.g1 MSMg01no351_b08.g1 CHROMAT_FILE:
MSMg01no351_b08.g1 PHD_FILE: MSMg01no351_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:15 2005
(480 letters)
>mm_chr13_24217419_24218298
Length = 880
Score = 812 bits (420), Expect = 0.0
Identities = 458/476 (96%), Gaps = 10/476 (2%)
Strand = Plus / Minus
Query: 5 ttctcccagtcgcacataaaaggtttttagtttgtttgttttgagatgggatctcatgat 64
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 654 ttctcccagtagcacataaaaggtttctagtttgtttgttttgagatgggatctcatgat 595
Query: 65 gtaacgcaggctagagctgaactcacagtcctcccgcctcagcctcttgagtgctgggat 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 594 gtaacgcaggctagagctgaactcacagtcctcccgcctcagcctcttga-tgctgggat 536
Query: 125 cacagagtgtgccaccacacctggtttctacgtcttgaattaacttctctcctagggaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cacagagtgtgccaccacacctggtttctacgtcttgaattaacttctctcctagggaga 476
Query: 185 taaggaacattcccaaaagcccattaagtcaaacctactaccctcactcacagtggcctg 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 475 taaggaacattcccaaaagcccattaagtcaagcctactaccctcactcacagtggcctg 416
Query: 245 gacggaggagaaaagtgctgacccggcctcacagctcaggccgctctgttccacagttga 304
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 415 gacggaggagaagagtgctgacctggcctcacagctcaggccgctctgttccacagttga 356
Query: 305 ttggtgcttctggtcctgtcctgaggtagtacattgtggatagatgtcttgtcagaacag 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 t---------tggtcctgtcctgaggtagtacattgtggatagatgtcttgtcagaacag 305
Query: 365 aaccactagtatcataagtgagggatgaaagagggagagcccagagttcctcagttccct 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aaccgctagtatcataagtgagggatgaaagagggagagcccagagttcctcagttccct 245
Query: 425 tggaagacacatctctaatgacatgaagtgacctttaaaaagcctcaccccttaga 480
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 244 tggaagacacatctctaatgacatgaagtgacctctaaaaaggctcaccccttaga 189
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
