BAC Information

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BAC

Clone NameMSMg01-351P12
Chromosome13 (Build37)
Map Location 114,861,655 - 114,862,029
singlet/doubletsinglet
Overlap geneArl15
Upstream geneCdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927
Downstream geneA430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351P12.T7 (MSMg01no351_p12.b1)MSMg01-351P12.TJ (MSMg01no351_p12.g1)
ACCAG463212AG463213
length7491,684
length of high quality
(start - end)
380 (55 - 434)---
definitionCHROMAT_FILE: MSMg01no351_p12.b1 PHD_FILE: MSMg01no351_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:20 2005CHROMAT_FILE: MSMg01no351_p12.g1 PHD_FILE: MSMg01no351_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCCAACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATCATGTTACCTGAACTAAGCCAGCCTGAGAAAGGC
AAATGTGGCGTATTATTCCTCATATATAATATACAGAATTTTAAAATACG
TGAACACAGAAAGGAGGCTATTTAGAAAGAGGAAAGGGAATAGCAATGGG
GAAGGGGATAGGAGAGAAAATAGGAAGTGATGCTGACCACAGTCCACGGT
GTCTAGGAACCTGTCTTTATTAAGTCCATTACTTTGTCCAGTGAATCTAT
ACAGACAAAATCCTGCAAGAAAAAAGGGTGTGAGTACGGAGATAGGGGAA
GTGCATCTTAGTAACTAGATTCAACGTTGCTTCCTCATGGACTTCTTCCA
AGGAATGTGCACTGCGGGCTGGCGACTCTAGTGGTCCGGGAAGTGCGCAA
ACATCACACGTCTCTTAGGCTTTTACTTGAGTTTGATTCTGCCTCCTAGC
TGGGGTCCTAAGCCATGTCGGACAGGAGCACAGAATAGTGCCCCCTGGAA
CTGATGTTCCGCCCACAATAGGGGCTCCAGGTGAATATATCCCAACCTCC
AGGGTCCACAGAAATGAAGCCATGACCACCCACCACTTCATTAGCCCTAG
CCCCCCTCGAGCAGGCGACTGTCCAAACCGGATCCTGGGGAAACTCAATT
GAGACTGTAACAAAAGGTACCCCCTTCGCTGCTGTTCCACTATTTTGTG
AAAGAATTTTGTGGGACATCATAGTANTCTACTATCTATATANANATATA
TCACTCATACAAAACTATCAACAGCACTATCTATATCTCTAACTTCTTAT
CTCGTCATTAGATGTACTGCATCCTCCTTATTCACTCATTACTCTATTGC
TACCCNCTCACCATCATNCTCCTTCATCACTACCTACCACACACATAACA
TACATCTCGACTCACTCTNCATACTACACAACTATTATGCATCTTCTCAT
CTATCATCNACCTACTCTANCAATCTACACTTACCACCACATATANTGAT
CATATATGACCAGTGCTATCTCACAGTCTATCATTATAACAGTATATACT
ACTATCACTATCTAATCACGACCACCTATAATTACTATACAACATTAAAA
TATCAAATAATCATCACGCNTCNTATACTATATCTTATCTATATCGTCTT
ATTCTTATCCCTTATTATATGCTCTTATATAATTTCTCTTTGTATNCATG
AACTATATAACTACTCTCTATACTATTATCATCATCTATATCTATCTCAC
ATACTTCTCTCTCTTATATACACTCTCCCCTCTAATACCTTCTACTCATC
ATTATCTATCTTACATCCTCTCGCGCTCTCCTATAATATCACCTCACTTC
TACGCAATCTACACCCTCTCAATNTCTTTTTATATCATATCCTCATTCTT
ATATTCTATCTCTATCTCTNTTATATACATATACATACACAATTTCCAAT
GATACCATCAACATACATTACAATAATATACCATATAATCTATAATTAAA
TCTTACTAATATTTCTTCAATCATACTATTAATCATATATACTTGATTCA
CCCAATATCACAATTATCTATCTATATAATAAGATCACACAAATGACATA
TACTCACACATATATACACTTGCACTACATCTAGAACTATATCATCTGCT
CATACTATCACACCACCATCNACCACTACATAGATTACTAGATCCTAGCA
GTATGTACATCTCTATATACAGACGGAACGCTAGATGCGACANCGGGGCA
TGCTAACGTGCTCATAGATAATTCTACTCACCATTATCCATGTATATATC
ATCTATAAACTAACGACCAACACTACTCACTACTTCTCTCCCAATATCAT
CNTACTNATAATATANCTATATTCATGCTTCTATTCTTATCTCTATATCA
CTCACATCTCACATTCACTCTTATATTCACTATGTGATATACTATCTCAC
ACGATCTATTTTATATACTNTTATCTCATGCATCTAACTANTACTCTATA
TCTCATTACTACACATATATCATATCTCTCATCCTACATCTATGTCATCT
GCACTGTATGACTTTCTTCTTTACTCTTCAGATGTTATACTANATGACTA
TGCTGTAAGATCTTCGCTCNTCTATCTATATATATATTTACTACACTATA
TTACATCACNCACACCATACTCATTAGTATATCAATCTCTACAATAGTAT
ATCAAATATCAGTCATATGACTACTCTCANGTATTGCATCTTATATAGAT
CTCACCANGTAGCTAATGNCGAGTGCTCTTTCACGCTACATAGAATATCA
TACTCTGACTCANTAAGACCTACTACATACTATTAGTACTCTAATTTCTT
CCTACTTCGCAATCTTCATCTTTAACTAATCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_p12.b1 MSMg01no351_p12.b1 CHROMAT_FILE:
MSMg01no351_p12.b1 PHD_FILE: MSMg01no351_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:20 2005
         (380 letters)



>mm_chr13_114861307_114862086
          Length = 780

 Score =  648 bits (335), Expect = 0.0
 Identities = 365/375 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcatcatgttacctgaactaagccagcctgagaaaggcaaatgtggcgtattattcc 65
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aattcatcatgttaagtgaactaagccagcctgagaaaggcaaatgtggcgtattattcc 664

                                                                       
Query: 66  tcatatataatatacagaattttaaaatacgtgaacacagaaaggaggctatttagaaag 125
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 663 tcatatataatatacagaatttttaaatacgtgaacacagaaaggaggctatttagaaag 604

                                                                       
Query: 126 aggaaagggaatagcaatggggaaggggataggagagaaaataggaagtgatgctgacca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aggaaagggaatagcaatggggaaggggataggagagaaaataggaagtgatgctgacca 544

                                                                       
Query: 186 cagtccacggtgtctaggaacctgtctttattaagtccattactttgtccagtgaatcta 245
           ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 543 cagtccacggtgtctaggagcctgtctttattaagtccgttactttgtccagtgaatcta 484

                                                                       
Query: 246 tacagacaaaatcctgcaagaaaaaagggtgtgagtacggagataggggaagtgcatctt 305
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 483 tacagacaaaatcctgcaagaaaaaagggtgtgagtacggggatgggggaagtgcatctt 424

                                                                       
Query: 306 agtaactagattcaacgttgcttcctcatggacttcttccaaggaatgtgcactgcgggc 365
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 423 agtaactagattcaacgttgattcctcatggacttcttccaaggaatgtgcactgcaggc 364

                          
Query: 366 tggcgactctagtgg 380
           |||| ||||||||||
Sbjct: 363 tggctactctagtgg 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)