Query= MSMg01no352_b08.b1 MSMg01no352_b08.b1 CHROMAT_FILE:
MSMg01no352_b08.b1 PHD_FILE: MSMg01no352_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:29 2005
(488 letters)
>mm_chr13_25266670_25267553
Length = 884
Score = 816 bits (422), Expect = 0.0
Identities = 469/488 (96%), Gaps = 7/488 (1%)
Strand = Plus / Minus
Query: 4 ggaattctttgataacccataggacactccagccaaaaaagcaggcagaccttcagccct 63
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 ggaattctttgagaacccataggacactctagccaaaaaagcaggcagaccttcagccct 565
Query: 64 ccctcctatcctccaaatctaatcctccagtctcagctccatccatctctgcagcagacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccctcctatcctccaaatctaatcctccagtctcagctccatccatctctgcagcagacc 505
Query: 124 acctgctgctgctgccttcccctcttctttgcttccatctcaaaccaagtatagaaccac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acctgctgctgctgccttcccctcttctttgcttccatctcaaaccaagtatagaaccac 445
Query: 184 agcagcaaaagcagcctggtgttagcaaacacaaaacaaacaaacaaacaaaaccagcat 243
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 agcagcaaaagcagcctggtgttagcaaacaca----aaacaaacaaacaaaaccagcat 389
Query: 244 gtagcgaatagagaaaacaggagaaaagatgccaaaaatacacactggagaaaagacaat 303
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 388 gtagtgaatagagaaaacaggagaaaagatgccagaaatacacactggagaagagacaat 329
Query: 304 atctttaacaaatatgctgggaaaccggatgtccacatgt---agaacgatatcacacac 360
|||||||||||||||||||| |||| |||||||||||||| |||| |||||||||| |
Sbjct: 328 atctttaacaaatatgctggaaaactggatgtccacatgtagaagaatgatatcacaccc 269
Query: 361 atatccatcacccgtcacagaactccaatttgaaaaatgggctatgggtcaacaaaaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atatccatcacccgtcacagaactccaatttgaaaaatgggctatgggtcaacaaaaagt 209
Query: 421 tttcaaagaataaataaacatggctaggaaatatcacaaaaagtgttcaacatccttagc 480
|||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 208 tttcaaagaagaaataaacgtggctatgaaatatcacaaaaagtgttcaacatccttagc 149
Query: 481 aattagga 488
||||||||
Sbjct: 148 aattagga 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 884
Length adjustment: 10
Effective length of query: 478
Effective length of database: 874
Effective search space: 417772
Effective search space used: 417772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_b08.g1 MSMg01no352_b08.g1 CHROMAT_FILE:
MSMg01no352_b08.g1 PHD_FILE: MSMg01no352_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:29 2005
(416 letters)
>mm_chr13_25068657_25069472
Length = 816
Score = 745 bits (385), Expect = 0.0
Identities = 413/433 (95%), Gaps = 17/433 (3%)
Strand = Plus / Plus
Query: 1 actatgtagccccatgttggccttgaacttctaaatgcctgttcttcctagggctggggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtagccccatgttggccttgaacttctaaatgcctgttcttcctagggctggggt 260
Query: 61 tgttaatgtaaaaagctgtagtttcttgatgtcacagtgccgtggtaaagacagaattcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttaatgtaaaaagctgtagtttcttgatgtcacagtgccgtggtaaagacagaattcc 320
Query: 121 taatgctcttcaccatcccccacccctacccgtgtaatcgtcttcggtagttacagagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgctcttcaccatcccccacccctacccgtgtaatcgtcttcggtagttacagagta 380
Query: 181 atcataaagtaaaaagctgccgtgggcctggctctgagctccaggctctgcttgcatttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcataaagtaaaaagctgccgtgggcctggctctgagctccaggctctgcttgcatttc 440
Query: 241 attgctttgcttcaagaagtttttcttcaggagggaaaacctagccactgctgatgttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgctttgcttcaagaagtttttcttcaggagggaaaacctagccactgctgatgttta 500
Query: 301 ttacagaatcagagggttcatcttgggaacacttagggccctggatggtattacagaaac 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 501 ttacagaatcagagggttcatcttgggaacacttagggccctggatggcattacacaaac 560
Query: 361 acagaaggcatttgccatcttagtagc-----------------cttactgctagttaca 403
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 acagaaggcatttgccatcttagtagcaaggagggacagcaagccttactgctagttaca 620
Query: 404 ggagaggctttgg 416
| |||||||||||
Sbjct: 621 gaagaggctttgg 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
