BAC Information

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BAC

Clone NameMSMg01-352C23
Chromosome13 (Build37)
Map Location 67,308,165 - 67,308,578
singlet/doubletsinglet
Overlap geneZfp455
Upstream geneEG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699
Downstream geneZfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352C23.T7 (MSMg01no352_c23.b1)MSMg01-352C23.TJ (MSMg01no352_c23.g1)
ACCAG463375AG463376
length801814
length of high quality
(start - end)
468 (46 - 513)406 (78 - 483)
definitionCHROMAT_FILE: MSMg01no352_c23.b1 PHD_FILE: MSMg01no352_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:38 2005CHROMAT_FILE: MSMg01no352_c23.g1 PHD_FILE: MSMg01no352_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCG
GAATTCTCACCTGAGTGACACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGAT
TCCACTTCACTCTAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGC
AGATGCTGGCGTGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTG
GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGTCCCAACTGGTAAGAAGAACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAANACGTGGTACATTTACACAATG
GAATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGGACTGGAGGGTATCATCCTGAGTGAAGTAATCCAATCACAAAA
GAACTCGCACAATATGTACTCCCTGATAATGGGAATTAACCCCCAAACTT
ATGGAACCCACCGTATTAGAAACCACTTGCCCACCCCTGAAATTTCCGAA
GAAAAAAAACAAAATGGGGAAACTTTATCCTTCTCTAAAAAGGGGAAAAA
ACACCCCTAAAAGAGTTACCGAAACCAATTTGCTGCTGGGCCGCAAGGAG
G
NCCGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTGGAGAGAAACCCTACAAG
TGTGAAGAATGTGGGAAATGCTTTGGCTTTCCCTCATTCCTTAAGCAACA
TCAAAACATTCATTGTAGAAAAAATGCCTACACATATGAAGATTGTGTGA
AAAGACTTTCCCCTCCTCTACCTCTTCAAGACAATGAGCAAATCCATACT
GAAGAGAAACCTTACAAGTGTGGAGAATGTTATAAAGCCTTTTCTTATCA
CTCAGCCTTTAGGATACACAAGACAGTTCATACTGGAGAGAATCCTTACA
AGTGTGAAGAGTGTGGCAAATGTTTTTCCTCATCTTCCTACCTTAAAAGA
CATCAAACCCTTCACTCTAAGTGTGAAGACTGTGGCAGATGTTTCTGCTC
ATCTTCATCTCTCAGGCGACATCAAAAATTCCATTCTGAAAGCAATCCCT
ATAAGTGTGAAAAATGTGACAAAAGGTTTTCATGCTCTGCAAGNCTTCCG
GAGCATCCAACAATTCTTACTGGAGAGAAACCATACCCTTGTGAAAATTG
TTCCAAAACCTTTCGTTATCCTCCTCCCTTATGAAAAAAAAAAAAGTTCT
TTCCCAAGAAAACCTACCATTGCCAAAAATGGCCCAAGGCCTTTTCCCTC
ACCCTGGCTTTGGAGAAAACCAAGTATTTCTTCTGAAAAAACACCCAAAC
CGGGGGGATGGGGGTAACCCCTTTCTTTTTTTAATTTCCTGCCCCTCCCT
CTAACGTTCCGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_c23.g1 MSMg01no352_c23.g1 CHROMAT_FILE:
MSMg01no352_c23.g1 PHD_FILE: MSMg01no352_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:38 2005
         (406 letters)



>mm_chr13_67307965_67308770
          Length = 806

 Score =  501 bits (259), Expect = e-146
 Identities = 372/419 (88%), Gaps = 25/419 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctggagagaaaccctacaagtgtgaagaatgtgggaaatgctttggctttccctcat 60
           ||||||| |||||||| | |||||||||||||||||| |||| |||||||||||||||||
Sbjct: 201 attctggggagaaaccttgcaagtgtgaagaatgtggaaaatcctttggctttccctcat 260

                                                                       
Query: 61  tccttaagcaacatcaaa-acattcattgtagaaaaaatgcctacacat-atgaagat-t 117
           |||||||||||||||||| | ||||||||||||||||||||||||| |  ||||| || |
Sbjct: 261 tccttaagcaacatcaaaga-attcattgtagaaaaaatgcctaca-aggatgaa-atat 317

                                                                       
Query: 118 gtgtgaaaagactttcccctcctctacctcttcaaga-caatgagcaaatccatactgaa 176
           |||| ||||||||||||||||||||||| ||||| || || |||||||||||||||||||
Sbjct: 318 gtgtcaaaagactttcccctcctctaccccttcaggaaca-tgagcaaatccatactgaa 376

                                                                       
Query: 177 gagaaaccttacaagtgtggagaatgttataaagccttttc-ttatcactcagcctttag 235
           |||||||| |||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 377 gagaaaccctacaagtgtggagaatgttataaagccttt-cgttatcactcagcccttag 435

                                                                       
Query: 236 gatacacaagacagttcatactggagagaatccttacaagtgtgaagagtgtggcaaatg 295
           |||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||
Sbjct: 436 gatacacaagacagttcacactggagagaaaccttacaagtgtgaagagtgtagcagatg 495

                                                                       
Query: 296 tttttcctcatcttcctaccttaaaagacatcaaacccttcactct-------------- 341
            |||||||||||||||| |||||||||||||||||  |||||||||              
Sbjct: 496 cttttcctcatcttcctgccttaaaagacatcaaatacttcactctgaagacaacccata 555

                                                                      
Query: 342 -aagtgtgaagactgtggcagatgtttctgctcatcttcatctctcaggcgacatcaaa 399
            ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 556 caagtgtgaagagtgtggcagatgtttctgctcatcttcatctcttagacgacatcaaa 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)