Query= MSMg01no352_e08.b1 MSMg01no352_e08.b1 CHROMAT_FILE:
MSMg01no352_e08.b1 PHD_FILE: MSMg01no352_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:45 2005
(486 letters)
>mm_chr13_113525625_113526510
Length = 886
Score = 851 bits (440), Expect = 0.0
Identities = 461/468 (98%)
Strand = Plus / Plus
Query: 19 ttatttgtctttttatagggaaaaaaaagagaaatcagaattattttgaagaaaaatatc 78
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttatttgtctttttataggaaaaaaaaagagaaatcagaattattttgaagaaaaatatc 278
Query: 79 tctgggattttgctagtggactttggcgaggaaatattgcctcctaaccctggcgctggc 138
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 279 tctgggattttgctagtggactttggcgaggaaatcttgcctcctaacactggcgctggc 338
Query: 139 agaagcagctgagtcccatcctttgcaggactgaatttcttaagtgactgtggctgtgtc 198
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggaagcggctgagtcccatcctttgcaggactgaatttcttaagtgactgtggctgtgtc 398
Query: 199 ccatgtcaggctgtcaggggccttcttgaatgtcctgatcttctggaaaggtatatgtca 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccatgtcaggctgtcaggggccttcttgaatgtcctgatcttctggaaaggtatatgtca 458
Query: 259 cgttaatggggacctaaggggcccatccccatcagccagtgtgtgctctccctctaagaa 318
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cgttaacggggacctaaggagcccatccccatcagccagtgtgtgctctccctctaagaa 518
Query: 319 catttttcgtggctgtggcacgttagataagcgttgcccagtttctggccaaaagccctg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 catttttcgtggctgtggcacgttagataagcgttgcccagtttctggccaaaagccctg 578
Query: 379 gaaaagtcataactttccagagccttcagcgctaataaagaacactaattttctggcttc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaaaagtcataactttccagagccttcagcgctaataaagaacactaattttctggcttc 638
Query: 439 tttaagtaaaattactcttttccccaccgaatatcatttttcttcttg 486
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tttaagtaaaattactcttttccccaccgaatatcatttttcttcttg 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_e08.g1 MSMg01no352_e08.g1 CHROMAT_FILE:
MSMg01no352_e08.g1 PHD_FILE: MSMg01no352_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:45 2005
(388 letters)
>mm_chr13_113694112_113694899
Length = 788
Score = 646 bits (334), Expect = 0.0
Identities = 352/358 (98%), Gaps = 1/358 (0%)
Strand = Plus / Minus
Query: 17 cctaatgaaaattaatttattctttagaaaataaacacctcctttgctttaatgtcattc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cctaatgaaaattaatttattctttagaaaataaacacctcctttgctttaatgtcattc 729
Query: 77 atatttttcctttcactgttggaattgactgggcatctaaaatgtactggtacttggtgc 136
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 728 atatttttcctttcactgttggaattgactgggcatc-aaaatgtactggtacttggtgc 670
Query: 137 cactcccaggggtactgaccttatttgtctaattttcatcttagttggaagaatccttta 196
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cactcccaggggttctgaccatatttgtctaattttcatcttagttggaagaatccttta 610
Query: 197 aaacctctgtatttgattttactatgcatctagaggacaatacttttgactaaggtagtg 256
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aaacctctgcatatgattttactatgcatctagaggacaatacttttgactaaggtagtg 550
Query: 257 tgtgaaagttagattggggcaagggggaatgtggaggtcacgctgtggtccacagatgag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgtgaaagttagattggggcaagggggaatgtggaggtcacgctgtggtccacagatgag 490
Query: 317 tacttggtttgtagagtgtttagctcaccctagaatacagcagcaccctagactacag 374
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 489 tacttggtttgtagagtgtttagctcaccctagactacagcagcaccctagactacag 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
