Query= MSMg01no352_f11.b1 MSMg01no352_f11.b1 CHROMAT_FILE:
MSMg01no352_f11.b1 PHD_FILE: MSMg01no352_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:51 2005
(425 letters)
>mm_chr13_29524563_29525387
Length = 825
Score = 706 bits (365), Expect = 0.0
Identities = 422/469 (89%), Gaps = 44/469 (9%)
Strand = Plus / Minus
Query: 1 ctaggaagaagaaacaaacttaagctgggtggtgtggctatttggttacagaagccagcc 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 482 ctaggaagaagaaacaaacttaagctgggtggtgcagctatttggttacagaagccagcc 423
Query: 61 aagggctctgggcatccattgtccagcttactccttctttggctctcctcatgggaagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aagggctctgggcatccattgtccagcttactccttctttggctctcctcatgggaagtc 363
Query: 121 aagttgcagagaggtctcataccagaaacacaggagctgtccaagcagagaaatgggcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aagttgcagagaggtctcataccagaaacacaggagctgtccaagcagagaaatgggcag 303
Query: 181 agccagagctcaagaacttaaaacactgaaaaactgaggatccatgattagtggatcttg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agccagagctcaagaacctaaaacactgaaaaactgaggatccatgattagtggatcttg 243
Query: 241 gaagtgaccacagggcagcataggagcagagagagagagaga------------------ 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gaagtgaccacagggcagcataggagcagagagagagagagagagagagagagagagaga 183
Query: 283 -------------------------a-aaactgccccgttcccttatacacacacactag 316
| |||||||||||||||||||||||||||||||||
Sbjct: 182 gagagagagagagagagagagagagagaaactgccccgttcccttatacacacacactag 123
Query: 317 atgcaggttgtatttgcaacaactcatgaatagaaaatatttccatgggctaacaattga 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atgcaggttgtatttgcaacaactcatgaatagaaaatatttccatgggctaacaattga 63
Query: 377 ttcatggggttttgtatgctattatgacataatctcagttaatattcgg 425
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttcatggggttttgtatgctattatgacataatctcagttaatattcgg 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_f11.g1 MSMg01no352_f11.g1 CHROMAT_FILE:
MSMg01no352_f11.g1 PHD_FILE: MSMg01no352_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:51 2005
(424 letters)
>mm_chr13_29337408_29338231
Length = 824
Score = 524 bits (271), Expect = e-153
Identities = 271/271 (100%)
Strand = Plus / Plus
Query: 154 tttggatattgcgtttaagaatcaagagtgagatgctatttccaaatacaaataaggcct 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tttggatattgcgtttaagaatcaagagtgagatgctatttccaaatacaaataaggcct 413
Query: 214 gagagtgagaagaccctgaaaaccaaaaaggaaagccagacttataaactcaacaaggca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gagagtgagaagaccctgaaaaccaaaaaggaaagccagacttataaactcaacaaggca 473
Query: 274 caagaaaataaggcaattttttcttttaattaaagaggacaggtaataggagttaaagac 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 caagaaaataaggcaattttttcttttaattaaagaggacaggtaataggagttaaagac 533
Query: 334 aagacaattgaagatcaagcaagagtgcccaacacttggataataggggaagcatctacc 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aagacaattgaagatcaagcaagagtgcccaacacttggataataggggaagcatctacc 593
Query: 394 acagacacacatatagccacaataaaacata 424
|||||||||||||||||||||||||||||||
Sbjct: 594 acagacacacatatagccacaataaaacata 624
Score = 66.5 bits (34), Expect = 3e-15
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 129 agccacacagaaagcaaaagaaaattttggatattgcg 166
|||||||| |||||||||||||||||||||||||||||
Sbjct: 1 agccacactgaaagcaaaagaaaattttggatattgcg 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
