Query= MSMg01no352_k05.b1 MSMg01no352_k05.b1 CHROMAT_FILE:
MSMg01no352_k05.b1 PHD_FILE: MSMg01no352_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:15 2005
(474 letters)
>mm_chr13_100218896_100219768
Length = 873
Score = 895 bits (463), Expect = 0.0
Identities = 469/471 (99%), Gaps = 1/471 (0%)
Strand = Plus / Plus
Query: 4 ggaattccacaggtcctctgctaccctatctctaccttttctcctgccagttcccactgc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacaggtcct-tgctaccctatctctaccttttctcctgccagttcccactgc 262
Query: 64 tgtcatgccttttcctatcccctcccaccagtctttgcgggctgaacactagagtgactg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtcatgccttttcctatcccctcccaccagtctttgcgggctgaacactagagtgactg 322
Query: 124 tttgatcaggcatctggtcttgtgaaccaacactagaatctagactccattgtgaagatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttgatcaggcatctggtcttgtgaaccaacactagaatctagactccattgtgaagatg 382
Query: 184 aaagaacatcctagagttgggttgggagacgcttgggctaaagacagcctgagactgctt 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaagaacatcctagggttgggttgggagacgcttgggctaaagacagcctgagactgctt 442
Query: 244 cattaaacataaggtctgatcactcaaggactgtgaacaccctgcatgttaaagcaggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cattaaacataaggtctgatcactcaaggactgtgaacaccctgcatgttaaagcaggaa 502
Query: 304 aggaggcagggagacggaccttcatcccaacccctccatcacagaagggctgtgaagggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggaggcagggagacggaccttcatcccaacccctccatcacagaagggctgtgaagggg 562
Query: 364 aaaccctctcacctcaaacctttgtgctcaataaaactccaccggtgaagtttagctaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaccctctcacctcaaacctttgtgctcaataaaactccaccggtgaagtttagctaaa 622
Query: 424 tggataaaagcaagaatcaagagctgtgcttcacagccatggaaatcacag 474
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggataaaagcaagaatcaagagctgtgcttcacagccatggaaatcacag 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space: 400432
Effective search space used: 400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_k05.g1 MSMg01no352_k05.g1 CHROMAT_FILE:
MSMg01no352_k05.g1 PHD_FILE: MSMg01no352_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:15 2005
(504 letters)
>mm_chr13_100342396_100343298
Length = 903
Score = 920 bits (476), Expect = 0.0
Identities = 497/504 (98%), Gaps = 1/504 (0%)
Strand = Plus / Minus
Query: 1 aaacatatgaatcaatggagggcattctcattcaaaccactgcagactggagataccgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aaacatatgaatcaatggagggcattctcattcaaaccactgcagactggagataccgaa 688
Query: 61 gaagaacaggaaatgggaatcccaaagcagacaatagcccatagtaaatattcagcccta 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 687 gaagaacaggaaatgggaatcccaaagcagacaatagcccgtagtaaatattcagcccta 628
Query: 121 ccaggagaccatgtctgtctttggaactctcaagagtacggaaggctataagaggccagg 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 627 ccaggagaccatgtctgtctttggaactctcaagagtacggaaggctgtaagaggccagg 568
Query: 181 catgtcatttccttgacaatataattctcagaaatgtattaggcttctgacttaactctc 240
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 567 catgtcatttccttgacaatataattctca-aattttattaggcttctgacttaactctc 509
Query: 241 ttcaagtaaaagctatgcatcagttttaatagccagagaccttgtgtgcacatgagtttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttcaagtaaaagctatgcatcagttttaatagccagagaccttgtgtgcacatgagtttt 449
Query: 301 aagcctgaggtctctccttactgccccctgcattccatccatccttgaccccatcttaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagcctgaggtctctccttactgccccctgcattccatccatccttgaccccatcttaag 389
Query: 361 ggcaactaccccaaagccaggtgaaacagcagaatgccgataaagggaacactactaatc 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 388 ggcaactaccccaaagccaggtgaaacaacagaatgccgataaagggaacactactaatc 329
Query: 421 taatccttaattcaatctttgctgcaagactgactttctcttcctgacagagacacccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 taatccttaattcaatctttgctgcaagactgactttctcttcctgacagagacacccaa 269
Query: 481 ctgaaagtaaggggttgtggggag 504
||||| ||||||||||||||||||
Sbjct: 268 ctgaaggtaaggggttgtggggag 245
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space: 441142
Effective search space used: 441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
