BAC Information

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BAC

Clone NameMSMg01-352M03
Chromosome13 (Build37)
Map Location 69,855,683 - 70,052,857
singlet/doubletdoublet
Overlap gene3110006E14Rik, 4930547H16Rik, Med10
Upstream geneAdcy2, LOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260
Downstream geneEG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352M03.T7 (MSMg01no352_m03.b1)MSMg01-352M03.TJ (MSMg01no352_m03.g1)
ACCAG463805AG463806
length765764
length of high quality
(start - end)
245 (80 - 324)247 (81 - 327)
definitionCHROMAT_FILE: MSMg01no352_m03.b1 PHD_FILE: MSMg01no352_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:25 2005CHROMAT_FILE: MSMg01no352_m03.g1 PHD_FILE: MSMg01no352_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,052,613 - 70,052,857)(69,855,683 - 69,855,928)
sequence
GCTCGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXGCGCGGAATTCAGCTACCTTCTTAAGGACAGCTGAAGCTGCACAGAAG
CCCCTCAGGCAAGTTTATTCTCTTCCTCTATCCAGTCCTGTTTCTTATCT
TTACCAGGTTTTGGTCTCAAAGGCCTTTCCTAACAAACACTAAGTGCTAA
ACTCAATCTCAGGTCTTGATGAAAATGTTGCCCTCAAGACCAACAGAGCA
GTGGGCATCCTCGGTGAGTCCTTGGATTTCAGAACACCATCGTGGGAGTC
ACCCAGGATAGGAACTAAGCAACCGTTCTTTTGTCCCCTACATTGACGCC
ATCACACTCCCTTCCACTGGTGGTAGAGCTTTCTGTCTAGCATTACCACC
CCTACGTAGCGCTGCCACTGGAGCCCACATTTCCACAGTATAGCACTTCC
CCAACCCCGACTCCCAGCTTCCTAAATTGCTCTCTAATGTGCATAATTAG
GTATTTTGTCATGGTTGTTTTTCCCTGCCTTAGCCTCTTAATTTTTTTTC
TTATTTTCCATCTGCTCGATCTGTCTTTCACTAATTTACGTCTCATTTTT
TTTCTTCTTTCGCGCCATTTTTTCTTTTTTACATACTTTATCCTTTTTTT
CCCTCATCCCCCCTTTTATTTTCCTATTCCATCCCTATCCCCTTCCCGCT
GTACACTCCGTAGTGCTATCTTTATCTCTCTTCCCCCCTATTTTACCTTA
ACTTTCTCTTTATTT
CTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGGGGCTGGATTCATA
GTGGCCCTTAGTGGCTGGTTCTACATCAGCATGATTTAGAAAAAAATCAT
GGCCAGGCAGAGCTCAGGTCGTGTGGTTTAGTGAGTCTAAATGTGTATGT
GAAAGTGGACATGTAGCATTAAATACATAAATCCCTGAATGGGATTCCTT
CCTGCATTAAACCATTTATGTTCCCGGATGAAAGGCACACAAACACACAC
ACACACACACATACACACACACACACTTATTTTCACACACACACACACAC
ATACACACACACACACTCTTCCACAGCCATTACATTTTAAAATGTCTTGA
TCAGCACAGTAGCTGGGTAACTGCCTACCCTCTAATTTGTTACAATCTAC
CTCCTATCCCTAACCCATGCTATTACCATGTCTCATCTGGTTCGCTTCTA
TCTCTTATACGTCGTCCTTCGGGCTACGCTCCTTTTGTTCTCCACTCCGG
GTCCCGTTCTCCTCCCTCCCTTTCTCTTATTACGTTTCCCCTTTCTTTCC
CCGTTGGCCCTCCCTCTCCCTCTCTCTCCCTCTTCCTTTTTTATCCTGGC
CACCCCACCCCTTTGGGAATATTCCTTTACCCTCTTGTCTCCATTGCCCC
CGTTTCCCCCCCCTTCCCCTTCCCTCTTTTCCCTTCATCCCCCTATCTCT
TTACACTTACCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_m03.b1 MSMg01no352_m03.b1 CHROMAT_FILE:
MSMg01no352_m03.b1 PHD_FILE: MSMg01no352_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:25 2005
         (245 letters)



>mm_chr13_70052413_70053057
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagctgaagctgcacagaagcccctcaggcaagtttattctcttcctctatccagtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagctgaagctgcacagaagcccctcaggcaagtttattctcttcctctatccagtcct 386

                                                                       
Query: 61  gtttcttatctttaccaggttttggtctcaaaggcctttcctaacaaacactaagtgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttcttatctttaccaggttttggtctcaaaggcctttcctaacaaacactaagtgcta 326

                                                                       
Query: 121 aactcaatctcaggtcttgatgaaaatgttgccctcaagaccaacagagcagtgggcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactcaatctcaggtcttgatgaaaatgttgccctcaagaccaacagagcagtgggcatc 266

                                                                       
Query: 181 ctcggtgagtccttggatttcagaacaccatcgtgggagtcacccaggataggaactaag 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacggtgagtccttggatttcagaacaccatcgtgggagtcacccaggataggaactaag 206

                
Query: 241 caacc 245
           |||||
Sbjct: 205 caacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no352_m03.g1 MSMg01no352_m03.g1 CHROMAT_FILE:
MSMg01no352_m03.g1 PHD_FILE: MSMg01no352_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:25 2005
         (247 letters)



>mm_chr13_69855483_69856129
          Length = 647

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcaggggctggattcatagtggcccttagtggctggttctacatcagcatgatttaga 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcagtggctggattcatagtggcccttagtggctggttctacatcagcatgatttaga 260

                                                                       
Query: 61  aaaaaatcatggccaggcagagctcaggtcgtgtggtttagtgagtctaaatgtgtatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaatcatggccaggcagagctcaggtcgtgtggtttagtgagtctaaatgtgtatgt 320

                                                                       
Query: 121 gaaagtggacatgtagcattaaatacataaatccctgaatgggattccttcctgcattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagtggacatgtagcattaaatacataaatccctgaatgggattccttcctgcattaa 380

                                                                       
Query: 181 accatttatgttcccggatgaaaggcacacaaacacacacacacacacacatacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatttatgttcccggatgaaaggcacacaaacacacacacacacacacatacacacac 440

                 
Query: 241 acacac 246
           ||||||
Sbjct: 441 acacac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)