BAC Information

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BAC

Clone NameMSMg01-352M04
Chromosome13 (Build37)
Map Location 111,231,905 - 111,232,233
singlet/doubletsinglet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352M04.T7 (MSMg01no352_m04.b1)MSMg01-352M04.TJ (MSMg01no352_m04.g1)
ACCAG463807AG463808
length779762
length of high quality
(start - end)
331 (53 - 383)322 (83 - 404)
definitionCHROMAT_FILE: MSMg01no352_m04.b1 PHD_FILE: MSMg01no352_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:25 2005CHROMAT_FILE: MSMg01no352_m04.g1 PHD_FILE: MSMg01no352_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTGGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTTGGTTCATTCTAGTTATGAGAGTTTATAAGTCTGT
TTTATTTTATGTATACATAGCAGTCATAGAGAATAAGCCACTTCTTCATA
ATGAGTAATTAAGACTCCTCTTCCTTATTGCTTACCTTCTGTGTCAGCCA
GCATGATAAGATTGACCCAAAGTTGTCTTAGACAAAAAGACAACTTTACA
GCCCAGCGTTCTTGCTCTCTCAAGACCAAGCCAACCACACCAGGATCAGT
AGAACCTTACTCACTCATGTTGTGGTTCTGTTCTTGGCGCTGCCTACACT
CAAGTTTTAAAGGAAATCTTGAGAAACTAAGCTGCTTCATGTCCCATTCT
CATTTGATTGATAAACTATCACCCCCCCCTGGATTTCCTTAGCCCTCCTC
CCATGACTTCCTATTCCCTCATACCTAGGCACGGTATTATTTCTTTTTCA
TATGTCCCCACTCATTATTCCTTGAATTCTTTTCTCGCCTCGCCCCATAT
TTTCACCCTTTTTTTTCCTCCTCCTTTTATTCCTCCTCTTTTCTGCCCTC
TTTTCTCCCTTTTTTCCTTTCTCTTTCTTCTCTCTTTCTCTCTTCAATTC
TTTTCCCCCTCTTCCCCTCCCCTCTTCTTTTTATTCCTTTCCCTTTTTCT
CCCCCCCCCTTATATTTTTTATTCTCCCTTTTCCTTCTCTTTCTTTTTAT
ATCCCTTTCCCTCACCCTCCCTCCCTTTN
AACCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGA
AACGCAAATCAAAACAACGCTGAGATTCCATCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGACGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTAGAAATGAGTCTGGTGGTTCCTCAGAAAATTGGACATATTACTACCAG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCTAACG
GGTGAGAAGGACACTTGGTCCACTATGTTCATAGCAGCCTTATTTATAAC
AGTCAGAATTCTGGATAGAACCCAGAGGCCTTTCGCCATACGAATGTACG
CTGAACATGTGGCATATTCTACCAATGGATTACTATCCAGTCACTTTAGC
TATGCATTTCTTTACCCTTCTATGTCCTCTGGCCGTCCTTTGTCGTCCTC
TTTCCCTGCCTCATTCCATTTTTCCCTTTCCCTTTCCCCCCTCCCCTTTC
CCCCCCTCTCCCCTACTTCCCCCCCCCCTCCTTTTATTCACATCCCCCTT
TCCCGATCCTCCTTTTCCTCACATCCGCCTCCCTTTCTTTCCCCCTTCCT
TACCCTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_m04.b1 MSMg01no352_m04.b1 CHROMAT_FILE:
MSMg01no352_m04.b1 PHD_FILE: MSMg01no352_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:25 2005
         (331 letters)



>mm_chr13_111231702_111232433
          Length = 732

 Score =  598 bits (309), Expect = e-175
 Identities = 324/331 (97%), Gaps = 5/331 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttggt---tcattctagttatgagagtttataagtctgttttattttatgt 60
           ||||||||||||||     ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 532 ggaattcatttggtaaa--attctagttatgaaagtttataagtctgttttattttatgt 475

                                                                       
Query: 61  atacatagcagtcatagagaataagccacttcttcataatgagtaattaagactcctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atacatagcagtcatagagaataagccacttcttcataatgagtaattaagactcctctt 415

                                                                       
Query: 121 ccttattgcttaccttctgtgtcagccagcatgataagattgacccaaagttgtcttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ccttattgcttaccttctgtgtcagccagcatgataagattgacccaaagttgtcttaga 355

                                                                       
Query: 181 caaaaagacaactttacagcccagcgttcttgctctctcaagaccaagccaaccacacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 caaaaagacaactttacagcccagcgttcttgctctctcaagaccaagccaaccacacca 295

                                                                       
Query: 241 ggatcagtagaaccttactcactcatgttgtggttctgttcttggcgctgcctacactca 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 294 ggatcagtagaaccttactcactcaagttgtggttctgttcttggcgctgcctacactca 235

                                          
Query: 301 agttttaaaggaaatcttgagaaactaagct 331
           |||||||||||||||||||||||||||||||
Sbjct: 234 agttttaaaggaaatcttgagaaactaagct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space:   232806
Effective search space used:   232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)