Query= MSMg01no353_k08.b1 MSMg01no353_k08.b1 CHROMAT_FILE:
MSMg01no353_k08.b1 PHD_FILE: MSMg01no353_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:34 2005
(597 letters)
>mm_chr13_118922211_118923207
Length = 997
Score = 1129 bits (584), Expect = 0.0
Identities = 590/592 (99%)
Strand = Plus / Minus
Query: 5 gaattcataacactttcgtgagtctttagggagctcagtattaacaaattagatagtcaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gaattcataacacttttgtgagtctttagggagctcagtattaacaaattagatagtcaa 533
Query: 65 tacagatttgatgaaaaagttgcaaggtgtcctaaggcaatgagagtggttttagaaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tacagatttgatgaaaaagttgcaaggtgtcctaaggcaatgagagtggttttagaaaag 473
Query: 125 cattcctcacaaatatgagatttggaggctgactataaatggagtttctgagtcctttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cattcctcacaaatatgagatttggaggctgactataaatggagtttctgagtcctttat 413
Query: 185 aattaactctcttaggtagcattttcagttgaaatggagatttgtggcactcataatggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aattaactctcttaggtagcattttcagttgaaatggagatttgtggcactcataatggt 353
Query: 245 agtataagaataaacatattcacgaggaaagtttgccttgagacatagccagatttagga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agtataagaataaacatattcacgaggaaagtttgccttgagacatagccagatttagga 293
Query: 305 tattatatattttgtgaaagtatatccatttgttcattatcatctttattttcccatgtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tattatatattttgtgaaagtatatccatttgttcattatcatctttattttcccatgtg 233
Query: 365 gcttagtttatagtagttacaaaatacctataataaaataaaaaatacaaattaaaacga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gcttagtttatagtagttacaaaatacctataataaaataaaaaatacaaattaaaacga 173
Query: 425 agccaaataaagtgtgctgattcaatcaaggaatagtggaacaaacatcaacatacgatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 agccaaataaagtgtgctgattcaatcaaggaatagtggaacaaacatcaacatacgatt 113
Query: 485 gctcaaagcaggcaggactatgaatcaagaatttataattatatagcacacaatgctgaa 544
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 112 gctcaaagcaggcaggactatgaatcaagaatttataattatatagcaaacaatgctgaa 53
Query: 545 actatagagtagactaaattatgaagctataaactatcaaagcagagatttt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 actatagagtagactaaattatgaagctataaactatcaaagcagagatttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_k08.g1 MSMg01no353_k08.g1 CHROMAT_FILE:
MSMg01no353_k08.g1 PHD_FILE: MSMg01no353_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:35 2005
(496 letters)
>mm_chr13_118780019_118780914
Length = 896
Score = 926 bits (479), Expect = 0.0
Identities = 488/493 (98%), Gaps = 4/493 (0%)
Strand = Plus / Plus
Query: 1 tataatcttaatagcttcaataactctatctagagtttctgagtcctttgcacttacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataatcttaatagcttcaataactctatctagagtttctgagtcctttgcacttacaga 260
Query: 61 gttgagggtctatgctacctactatgtgtatataagtaaggttgtgttgttcatgaatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgagggtctatgctacctactatgtgtatataagtaaggttgtgttgttcatgaatgg 320
Query: 121 attgattaatgtaaatttctcccaacctagattacaaagttcttaatactagtaagtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgattaatgtaaatttctcccaacctagattacaaagttcttaatactagtaagtcag 380
Query: 181 atttcagtgttaggcacagtgactcattagattcttaaaaaatggttaaagagaaaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcagtgttaggcacagtgactcattagattcttaaaaaatggttaaagagaaaaatc 440
Query: 241 attaaatataattcctttgatagttatcttcatgatcctttaaaaatgctccaaaaaaaa 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaataaaattcctttgatagttatcttcatgatcctttaaaaatgctccaaaaaaaa 500
Query: 301 aagaagaaagaaagaaagaaagaaagaaagaaagaaaatgctcccttccttgctctttag 360
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 aagaagaaagaaagaaagaaagaaagaaagaaa----atgctcccttccttgctctttag 556
Query: 361 gcatcttaaatatctgagcttctcattttatatgaaacagggtaaagttgtggttagagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcatcttaaatatctgagcttctcattttatatgaaacagggtaaagttgtggttagagt 616
Query: 421 ctttcgattctgaaacacattaattataatagctctaactctttacacataagtaattat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctttcgattctgaaacacattaattataatagctctaactctttacacataagtaattat 676
Query: 481 tagcaagtttttc 493
|||||||||||||
Sbjct: 677 tagcaagtttttc 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
