BAC Information

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BAC

Clone NameMSMg01-355F12
Chromosome13 (Build37)
Map Location 75,449,753 - 75,645,989
singlet/doubletdoublet
Overlap genenone
Upstream genePdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204, EG544954, Pcsk1
Downstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355F12.T7 (MSMg01no355_f12.b1)MSMg01-355F12.TJ (MSMg01no355_f12.g1)
ACCAG465754AG465755
length779796
length of high quality
(start - end)		513 (44 - 556)461 (74 - 534)
definitionCHROMAT_FILE: MSMg01no355_f12.b1 PHD_FILE: MSMg01no355_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:46 2005CHROMAT_FILE: MSMg01no355_f12.g1 PHD_FILE: MSMg01no355_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,645,667 - 75,645,989)(75,449,753 - 75,450,213)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTATGTCATATAAAGTGTGTGGTGTCTTCAGCAATAGGGTCTTAGC
ATCTAGTTATGGTGGCAGAACCAAGAACAGTAGCAAAAGTTGAGTGCCTC
TGGAGCTTCTCTGTACAAAAACTCACGGTGAGGTATTCCATGTCTAGGAC
TGTTTTTTTGTTTGTTAAATTGTTGTTGTTACTACCATCATCATCTTCGT
CATCGTAGTCGTCACTATCGTTGTCACTTCCCATCCCCCCTTTTTCTGTA
TACATTTGGGGGCATGGGGAGGTCAGAATAGGCATCAGATATCCTGAAGC
TGGAGTTATTGGTGGTTATGAACCACTCACATGGGTTCTGGGAACTGAAC
TAAGGTCCTTTGTAATCGGCGGCAAGTTATCTTTCCAGTCCTTGACACTA
AGGTTTTTGCTTAATAACCTGTGGCTTTTGGGAGTAGTGTTGATCTTCCT
TGTAAGATACCTCTGTTCAAACTCCTGATTGGAAAGTTACATTTTAAAAT
TAGTCTGTAATGTAAAGGCTTCCATGTGTCCTTTCATACATCTTTTGTTC
TTGCTTACGCTCCCTCTGCTCTTCTCTTTTATCCTACATTCCCTTATCCC
CCCTTAAACTTTCCTACCTTAAAAACTTCCCCTCCAAAGAAGGTTTAAAA
TTTAAAGGTAATCCCCTTTCCTCGTTTTCCCTCCAAAAAACCCTTCTCTC
CTATCTTAAACCCTTTTTTCTTAATCCCG

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGCTCCCACCAGGTGTTTAAACTGCA
TACAAATGGACGACATGAATGCTAAGAAGATGTAAAGAAAGGGCACTGCT
GGACTTGAGTTCTACTTGCAACAAAGACAACATAACATGCTTAATGATGT
GTAGGAGGGTTAATTATGTGTGGAATAAGTGACAAATAGTATGCACATAG
TTAAATAAAGTTTATTCTTAACTATGTCTCTAATCTTTCCGCCCCTTTAC
TTATTCCCCCATAATTATTTTTTATGGCTCTTGCTGTTTTTCTTTTGTAA
GAGAAACAAGAACAAAAGTTCTCAACAAGTAGTTATTAGATAAAAGAAAT
ACTAATGTTAATAACTCAGCTTCAAGTTTCTCTGAGGTGTTTATTGTGCT
ACATATACCCATAATCTCTTTTGTCCTTCTATATTCCTGTCCATATTTCC
TCTATTGCCACGGGCTGGCTCAGTCGAAGTCCCTCAACCCAGGGGAGAAT
CAGAGTTCTGGTACTCAAGGGGGCAAAAAGTCCGTGAGGAACAACCCGAT
TCCAACCCTGATAGTGCTTAATCCGAATGGTAACCTTCCCAAGCGAGAAT
CCAACCTTTACTTATTCTTTTAAAATAAAAACACATGTACCCTAGGCTCG
GTTTCTACCCATAAACTTTATAAGTTTTGTGTGAGGAAAAGTATCCTCTT
ATCCCTTATATAAATAAGTTCCCCTTGATAACTCTGCTGTCAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_f12.b1 MSMg01no355_f12.b1 CHROMAT_FILE:
MSMg01no355_f12.b1 PHD_FILE: MSMg01no355_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:46 2005
         (513 letters)



>mm_chr13_75645077_75645989
          Length = 913

 Score =  625 bits (323), Expect = 0.0
 Identities = 323/323 (100%)
 Strand = Plus / Minus

                                                                       
Query: 191 accatcatcatcttcgtcatcgtagtcgtcactatcgttgtcacttcccatccccccttt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 accatcatcatcttcgtcatcgtagtcgtcactatcgttgtcacttcccatccccccttt 854

                                                                       
Query: 251 ttctgtatacatttgggggcatggggaggtcagaataggcatcagatatcctgaagctgg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 ttctgtatacatttgggggcatggggaggtcagaataggcatcagatatcctgaagctgg 794

                                                                       
Query: 311 agttattggtggttatgaaccactcacatgggttctgggaactgaactaaggtcctttgt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 agttattggtggttatgaaccactcacatgggttctgggaactgaactaaggtcctttgt 734

                                                                       
Query: 371 aatcggcggcaagttatctttccagtccttgacactaaggtttttgcttaataacctgtg 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aatcggcggcaagttatctttccagtccttgacactaaggtttttgcttaataacctgtg 674

                                                                       
Query: 431 gcttttgggagtagtgttgatcttccttgtaagatacctctgttcaaactcctgattgga 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcttttgggagtagtgttgatcttccttgtaagatacctctgttcaaactcctgattgga 614

                                  
Query: 491 aagttacattttaaaattagtct 513
           |||||||||||||||||||||||
Sbjct: 613 aagttacattttaaaattagtct 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_f12.g1 MSMg01no355_f12.g1 CHROMAT_FILE:
MSMg01no355_f12.g1 PHD_FILE: MSMg01no355_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:46 2005
         (461 letters)



>mm_chr13_75449553_75450413
          Length = 861

 Score =  845 bits (437), Expect = 0.0
 Identities = 455/461 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctcccaccaggtgtttaaactgcatacaaatggacgacatgaatgctaagaagatgt 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 201 aggctcccaccaggtgtttaaactgcatacaaatggacgacatggatgctaaaaagatgt 260

                                                                       
Query: 61  aaagaaagggcactgctggacttgagttctacttgcaacaaagacaacataacatgctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaaagggcactgctggacttgagttctacttgcaacaaagacaacataacatgctta 320

                                                                       
Query: 121 atgatgtgtaggagggttaattatgtgtggaataagtgacaaatagtatgcacatagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatgtgtaggagggttaattatgtgtggaataagtgacaaatagtatgcacatagtta 380

                                                                       
Query: 181 aataaagtttattcttaactatgtctctaatctttccgcccctttacttattcccccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaagtttattcttaactatgtctctaatctttccgcccctttacttattcccccata 440

                                                                       
Query: 241 attattttttatggctcttgctgtttttcttttgtaagagaaacaagaacaaaagttctc 300
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 attattttttatggttcttgctgtttttcttttgtaagagaaacaagaacaaaatttctc 500

                                                                       
Query: 301 aacaagtagttattagataaaagaaatactaatgttaataactcagcttcaagtttctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaagtagttattagataaaagaaatactaatgttaataactcagcttcaagtttctct 560

                                                                       
Query: 361 gaggtgtttattgtgctacatatacccataatctcttttgtccttctatattcctgtcca 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gaggtgtttattgtgctacatatacccataatctcttttttccttctatattcctgtcca 620

                                                    
Query: 421 tatttcctctattgccacgggctggctcagtcgaagtccct 461
           ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 tatttcctctattgccacgggctggctcagtcggagtccct 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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