BAC Information

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BAC

Clone NameMSMg01-355H03
Chromosome13 (Build37)
Map Location 46,501,851 - 46,502,271
singlet/doubletsinglet
Overlap genenone
Upstream geneMylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574
Downstream geneRbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355H03.T7 (MSMg01no355_h03.b1)MSMg01-355H03.TJ (MSMg01no355_h03.g1)
ACCAG465832AG465833
length800814
length of high quality
(start - end)
428 (41 - 468)352 (73 - 424)
definitionCHROMAT_FILE: MSMg01no355_h03.b1 PHD_FILE: MSMg01no355_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:54 2005CHROMAT_FILE: MSMg01no355_h03.g1 PHD_FILE: MSMg01no355_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGGGCTATCCCAAGCTAAGTAGTGAGACCCTGTCTCAAAGCAAACACACC
CACAACTTCAAAACTCATAAAGAAAACATTACAGACGTAAAAAGAAACAG
ACACCTAAATTCCCAGTGGAAATTGTAAGAACTTGTTTTCAGTAACTTAC
AGATAAATAGGCAAAGAACATTTGTAACATTATTAAGTTGTAGAAGTTTG
AGAAAACAAGCCTGGGTTAGTACATCTAGAGTGTTATATGGTTAAGTGTA
GGGTGAATATGGTTGTCATGCCACATTAACTATTTAGTGAAATAAATTTC
TGGGCAAAGCAGGTGGTAAAAACTACAATTTTGAAATGATGAAGGGATTA
AAAATCAAAAGAAGTATTCCTGTTGTTGAAGTTGAGAAAGAAAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA
AGGAATGAAGAAAGGAAGATAGGAATAAAGATAGATTGAATCTATTGAAT
TCTCCCTTACCCAACCTTCGATTTACTGACAGATATATATTCCCTGATCA
TTTCACGCTCCTTACAATATATTTCAGTCGCTATGTTATTATCTTATCTT
ACTGCCCCTTCTACCTACTTTTGTTATTCCTGATTCCCTCCTTCTTCCCT
ACCCCTTTTTATTTACCCCCCCATTATTTTACTTTCTTTTCCTTCCTTTG
CTTTTCCCGCCTACTTCACTCTATTCCCCTCTCCCTCTTGTATATTTTTN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTCACAGGGGCATGTGTTTGAACACG
TGATTCCCAGCTGGTGGTGCTGTCTTTGTGAGGTGGGGATTAGCCAGAAG
AAGCAGTTCTTTGTAGGTTGGGCCCTGAGGCTGATAGTTTGTTGAAGCAT
GGCTTCCTAGTCTGCAGAGATGTGAGCAAGCAGCCTCCTATTCCTACTGC
CACAGCTGTGAGCTGTTCCTCTTCCCATGATTTCCCCAGCACAACGGACT
ACATCTTCAAACTGCTCGCCAAAATCAACCCCGCTTCTTTACATTGCTTC
TTCACCATATTCTTGGTCACAGCTGTGAGAAAAATAATGCCCAAGTAATG
GCTAGGGGCCATGGGAAGGAGATGCCCAGTGGAGGTAGTTGTTAGAGGTT
TGCAGTGCTGCTTGTCCTGGGAATTTAGTCCCTAATGCACACTGACACTC
TATCTACTTGTAATATATGTCATTCACATGGATTGTCCCCCCCATGTTTT
ATGTAATTTTTTTCAAATCATATTTCGATTTTTCCCCTTACCTCTTCTTT
TCTCTTTATTGTTCTCCCCCTTCTTCTTTTTGTTTTTTTTCTTTCTATCT
TACCTTCCCTCGCATTTCTTCCCCTTTTTAAGCCATCCTTCCTCTTCTTC
CTTTTTCTTCTTCTTTTTATTATTTTTGCTTCTCTATTCCAACTCTACTC
GCTTTATCCTCTCTCTCCTTCTCCGCCCCTCCTCCCCTCCTTTGTATTTT
TCACCCTCCTGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_h03.b1 MSMg01no355_h03.b1 CHROMAT_FILE:
MSMg01no355_h03.b1 PHD_FILE: MSMg01no355_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:54 2005
         (428 letters)



>mm_chr13_46501647_46502474
          Length = 828

 Score =  783 bits (405), Expect = 0.0
 Identities = 417/421 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgggctatcccaagctaagtagtgagaccctgtctcaaagcaaacacacccaca 64
           |||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggttagccaaagctaagtagtgagaccctgtctcaaagcaaacacacccaca 264

                                                                       
Query: 65  acttcaaaactcataaagaaaacattacagacgtaaaaagaaacagacacctaaattccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttcaaaactcataaagaaaacattacagacgtaaaaagaaacagacacctaaattccc 324

                                                                       
Query: 125 agtggaaattgtaagaacttgttttcagtaacttacagataaataggcaaagaacatttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtggaaattgtaagaacttgttttcagtaacttacagataaataggcaaagaacatttg 384

                                                                       
Query: 185 taacattattaagttgtagaagtttgagaaaacaagcctgggttagtacatctagagtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taacattattaagttgtagaagtttgagaaaacaagcctgggttagtacatctagagtgt 444

                                                                       
Query: 245 tatatggttaagtgtagggtgaatatggttgtcatgccacattaactatttagtgaaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatatggttaagtgtagggtgaatatggttgtcatgccacattaactatttagtgaaata 504

                                                                       
Query: 305 aatttctgggcaaagcaggtggtaaaaactacaattttgaaatgatgaagggattaaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatttctgggcaaagcaggtggtaaaaactacaattttgaaatgatgaagggattaaaaa 564

                                                                       
Query: 365 tcaaaagaagtattcctgttgttgaagttgagaaagaaagagagagagagagagagagag 424
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 tcaaaagaagtattcctgttgttgaagttgagaaagaaagaaagagagagagagagagag 624

            
Query: 425 a 425
           |
Sbjct: 625 a 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)