BAC Information

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BAC

Clone NameMSMg01-355O08
Chromosome13 (Build37)
Map Location 18,232,637 - 18,432,243
singlet/doubletdoublet
Overlap genePou6f2
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355O08.T7 (MSMg01no355_o08.b1)MSMg01-355O08.TJ (MSMg01no355_o08.g1)
ACCAG466172AG466173
length795789
length of high quality
(start - end)
303 (35 - 337)237 (72 - 308)
definitionCHROMAT_FILE: MSMg01no355_o08.b1 PHD_FILE: MSMg01no355_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:28 2005CHROMAT_FILE: MSMg01no355_o08.g1 PHD_FILE: MSMg01no355_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,431,952 - 18,432,243)(18,232,637 - 18,232,873)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATT
CTTTAATTTACCGGAGAAAGCACTCAATTTTATAAGAATGCATGTCAGTT
CCTCCATCTAGAGTAGGTTTCCCATATTTACTGAGTAAATCTGGATAGTA
TATTGCTACAGAATGGCAAGAACAGGACAGAATGAGCAGCTGACACTGCT
CAGATCCTCCTTGACTTTCCTAGTACCAGGGACTTCACTGAACTCAACAT
ATGGAGCAAATATCATTGCTGCAGCAGTTGTGTCATGTTTCCATGACTTG
CTAAGATCAGAAGTAGTTATGACCCATGTCATTGGTCTGAAATAAGGTAC
ATGCTACAGGCTAAGAGTCTGCTGGTGTGGGATCAATTTTCATGGCATTA
TACTTACAACTTGCCCATGATATAAAGTGTTGTGCTCTCTCAAGGATCTC
TGCAAAATTTCTTGACTGTGCCTGTAATATTTCTGCTCTTCATGGAACTA
TTCTTCTTGGTTTTTAAGCTTATCCCCCATATTATTTTGAATTCTTATAA
TATACCATAACTTGCTATATTTAATACGCTTTCCTTACCTATTATGAATT
GTTACGCTATTGATTATTCTTCCTTGCTTTGCTCCCCCTTTATGTCTTAT
CTACCTAATAGATTTTCTCTGTTGTTTCCACGGTTTCCCAGTTTCTAATG
CTCCCTTTGTATCCCTCCCTTCCCCTATAATTGTCACTCCCTTTCTATCC
TGCTTTCTCTTTTATCCACAGTCTTCACTCCCCTCCCTCCCCCCC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACACTACTATTGCCTCCATAGAGGGAA
GCCAGGTTAGTTAGGGGAGACCTGGGGTGTGGTGGTTCATCCTCTTGGTG
TGGAAGAGCTGGTCTCTGGACATGTCAAGTTTGGTCCTGGGGCTTGTGTC
AATGATTACAACAACACAAAGAAGAACTAATTTACTTTTAAAACGTTTTT
GAATTTTGTCTCATGTCTGTTTACTTATTACTCCTTTAAGGCCTCTCAAG
GAAATGGGCTCTGATAGGTTGAGGAAGGAGAGAGGAGAAAAGTTCCTCTA
GAAAACTTGGAGGGATCTCTCCCTTCTTCCTGGGTTGCCCTTCTAAAAAG
ATGTTCCAGCACCTCAGGGTCCTAATGAATTTGAAGGTTAGCCTTGACTG
TATCCACCCTTATTAATTATTAGTAATATTTGTTTCACTTTAAAAGGTCT
GACTTGGTTCTTATCTAGTTTTTATTGTTTGTTATTTTTTTTTCACCATT
CAGTATTATTTGCGCCCTGTATTTAACTTTTTTTTCGTCTTTCTACTCTC
TTATCTCTTTACACTCCCCCTTTTCCTATCTGATTTTGCCATTCTTTCTC
TCCCCCTGAGTTTCTACTCTCAATCTTTTTTTAATCATTCAACTCTGCTT
TTATATACAATTATTTGTGTATACCCTCCCTCCTTTCATCTCTATTACGT
CATTCTTTTTTTCTCTACCCTTTATTTTTTTCTTTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_o08.b1 MSMg01no355_o08.b1 CHROMAT_FILE:
MSMg01no355_o08.b1 PHD_FILE: MSMg01no355_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:28 2005
         (303 letters)



>mm_chr13_18431741_18432443
          Length = 703

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattctttaatttaccggagaaagcactcaattttataagaatgcatgtcagttcctcc 71
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaattctttaatttaaaggagaaagcactcaattttataagaatgcatgtcagttcctcc 444

                                                                       
Query: 72  atctagagtaggtttcccatatttactgagtaaatctggatagtatattgctacagaatg 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atctagagtaggtttcccatatttactgagtaaatctggatagtatattgctacagaatg 384

                                                                       
Query: 132 gcaagaacaggacagaatgagcagctgacactgctcagatcctccttgactttcctagta 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcaagaacaggacagaatgagcagctgacactgctcagatcctccttgactttcctagta 324

                                                                       
Query: 192 ccagggacttcactgaactcaacatatggagcaaatatcattgctgcagcagttgtgtca 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccagggacttcactgaactcaacatatggagcaaatatcattgctgcagcagttgtgtca 264

                                                               
Query: 252 tgtttccatgacttgctaagatcagaagtagttatgacccatgtcattggtc 303
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 263 tgtttccatgacttgctaagatcagaagtagttgtgacccatgtcattggtc 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no355_o08.g1 MSMg01no355_o08.g1 CHROMAT_FILE:
MSMg01no355_o08.g1 PHD_FILE: MSMg01no355_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:28 2005
         (237 letters)



>mm_chr13_18232437_18233073
          Length = 637

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacactactattgcctccatagagggaagccaggttagttaggggagacctggggtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacactactattgcctccatagagggaagccaggttagttaggggagacctggggtgtg 260

                                                                       
Query: 61  gtggttcatcctcttggtgtggaagagctggtctctggacatgtcaagtttggtcctggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggttcatcctcttggtgtggaagagctggtctctggacatgtcaagtttggtcctggg 320

                                                                       
Query: 121 gcttgtgtcaatgattacaacaacacaaagaagaactaatttacttttaaaacgtttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgtgtcaatgattacaacaacacaaagaagaactaatttacttttaaaacgtttttg 380

                                                                    
Query: 181 aattttgtctcatgtctgtttacttattactcctttaaggcctctcaaggaaatggg 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattttgtctcatgtctgtttacttattactcctttaaggcctctcaaggaaatggg 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)