BAC Information

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BAC

Clone NameMSMg01-356B20
Chromosome13 (Build37)
Map Location 75,868,748 - 75,869,093
singlet/doubletsinglet
Overlap geneEll2
Upstream geneCast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986
Downstream geneLOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356B20.T7 (MSMg01no356_b20.b1)MSMg01-356B20.TJ (MSMg01no356_b20.g1)
ACCAG466338AG466339
length787822
length of high quality
(start - end)		507 (38 - 544)349 (76 - 424)
definitionCHROMAT_FILE: MSMg01no356_b20.b1 PHD_FILE: MSMg01no356_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:45 2005CHROMAT_FILE: MSMg01no356_b20.g1 PHD_FILE: MSMg01no356_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCTTT
CTTTATTCCTGTACCCCATTTTTAATGGGGTTATTTCAATTTCTGGAGTC
CAGCTTCCTGAGTTCTTTGTATAGATTGGATATTAGTCCCCTATCAGATT
TAGTATTGGTAAAAATTCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTA
TTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCA
TTTCTTGATTCTTGAACTTACAGCACAAACCATTGGTGTTCTGTTCAGGA
ATTTTTCCCCTGTGCCCTTATCTTCGAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTAGTTTTATGTGGAGGTCTTTGATCCACGTAGA
CTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTTGCATTTCTACAT
GAGAACCGCGAGTTGTGCCAGCACCATTTGTTGGAAATACTGTCTTTTTT
CTACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACATTAAGTGT
GTGGGTTCTTTTCTGGATCTTCAGTTCTAATCCAATGATGTATCTGACTG
TAGGTTGTACCCGAACCATGCAGGTTTTATAACATTGCTCTGTTATACAC
CCTGGAGCCATGTTTGTGGTTTTCCCCCATAAGACCTTTTTTTATTTGCG
AAAATATTATTGGGTTCCATCCAAATTCTTGTTGTTCCTCACCGATATTT
TATTTTTGCCCCCTTCTTACTCCGCTATAAAATATGA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATTTTTTAATTTATTCTCACATT
CTCATACACATTCGTTGACCACCTCTCCAGCTGTTAATGAGAGTGATGGT
CAGGAAGACTTTAGAGAAGTCCTTTGGGAGATGAATTTGAACGGTTGCAG
GACTTGGTTAGTGAGGGAAGAGGGAAATCCATTTTATACCTGAGCTTTCA
CAGCACGAGCAAAGGCAAACAGGTGTGGCATGGCTCTCCTCAAGGAGCCA
CTCGTCTGCAAATCTCTGTGGAAGTCTGAACTTTGAAAAGCTTTCCCCTT
CAGTTTTCTTCCTTACAGCTGGATTCACTATAAGAATACACACACACACA
CACACACACACACACACACACACACACACACTCACACTCACACAGATTTT
CTCAGGAGAAGTTTTTGTTTGTGTTTCCAAGACAGGGCTTCTCTTTGTAA
CCCCTGGTTGGCCTGGACCCCCCCTCTGTTAAACCAGGCTGGGCCTCCCA
CTCCAGAAAACCTCCTGGCTTTTTCCTCCCCTTGGGTGTGATTTATACGG
GGCGGGTCCTACTGGCCCCTCCCGCCGCAAATATATTTCTTTCCCTCTTC
CCCGCCATCAATTTCCTGTCGTGTTACCCCCGTCTTTTCTCCCCTTGTTT
TTTCTCCCTTTTGTTCTCACTCCTTCTTTTGTATGTTATCTCCCCCCTTT
CCTGTTTTCCCTTTCCCCTTTTTTTGCACTCTCCTTCCCTTTTTTTCTCC
CCTCCTCTCCCTCTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_b20.g1 MSMg01no356_b20.g1 CHROMAT_FILE:
MSMg01no356_b20.g1 PHD_FILE: MSMg01no356_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:45 2005
         (349 letters)



>mm_chr13_75868545_75869293
          Length = 749

 Score =  661 bits (342), Expect = 0.0
 Identities = 345/346 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttttttaatttattctcacattctcatacacattcgttgaccacctctccagctgttaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttttttaatttattctcacattctcatacacattcgttgaccacctctccagctgttaat 263

                                                                       
Query: 64  gagagtgatggtcaggaagactttagagaagtcctttgggagatgaatttgaacggttgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagagtgatggtcaggaagactttagagaagtcctttgggagatgaatttgaacggttgc 323

                                                                       
Query: 124 aggacttggttagtgagggaagagggaaatccattttatacctgagctttcacagcacga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggacttggttagtgagggaagagggaaatccattttatacctgagctttcacagcacga 383

                                                                       
Query: 184 gcaaaggcaaacaggtgtggcatggctctcctcaaggagccactcgtctgcaaatctctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcaaaggcaaacaggtgtggcatggctctcctcaaggagccactcgtctgcaaatctctg 443

                                                                       
Query: 244 tggaagtctgaactttgaaaagctttccccttcagttttcttccttacagctggattcac 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 tggaagtctgaactttgaaaagctttccccttcatttttcttccttacagctggattcac 503

                                                         
Query: 304 tataagaatacacacacacacacacacacacacacacacacacaca 349
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tataagaatacacacacacacacacacacacacacacacacacaca 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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