BAC Information

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BAC

Clone NameMSMg01-356K17
Chromosome13 (Build37)
Map Location 50,188,317 - 50,188,761
singlet/doubletsinglet
Overlap geneLOC667546
Upstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907
Downstream geneLOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356K17.T7 (MSMg01no356_k17.b1)MSMg01-356K17.TJ (MSMg01no356_k17.g1)
ACCAG466755AG466756
length766788
length of high quality
(start - end)		610 (35 - 644)445 (66 - 510)
definitionCHROMAT_FILE: MSMg01no356_k17.b1 PHD_FILE: MSMg01no356_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:28 2005CHROMAT_FILE: MSMg01no356_k17.g1 PHD_FILE: MSMg01no356_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:28 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
CAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCA
CCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGATCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAAGTTTGGAGTTTCATTAGGTCCCATT
TGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACAT
GATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTG
TCTCTATACCAGNATTATGCAGTTTTTATCACAATTTGCTCTGTAGTAAA
GCTTTAGATCATACATGGTGATTTCCCCAGAGGTTCTTTTATCCTTGAGA
AGACTTTTTGCTATCCCAGGTTTTTTGTTATTCCAGATGAATTTGGCAAT
TGCCACTCTCCATTCN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTCCCAGGCATCTCTTTGCCTATGGGCTCTGAGG
AACAACTCTCTAACAGGCCTGGTACTTAGCTAGGGGCTCTAAGTGTGGGA
CCTCCAGACCATCACGGTCTCAGACTGACTTCTGTGAGGGCAGAGAGTAG
GCCTCAACTGTGTGCACTGTGGAGGGGGAGGGAATTACTATGAGACCTGG
TTCTGCCTGTTGTTTTCTTTAACAGTAGGAGAAATATGAACTTGTTCCTA
ATGTGCAGAAGCCTGGTGGATCAGGAGAGATGGACCTGGAAGCAATACCA
CCTTGATGTTGTTGTCATTTGCATCATGTGAGGGAAGAATTTCCTGGTGC
CTGGGCAATCAGACCGCTGGAAACCCTGGCATTGGCAGCACTAAGTATTG
GTTTGGAATCCACTGCCACACTTTTAGATGAGGAAGTCAGCAGGAGACAA
GTCTGCTACAGAAAGCTAGATACAGACCTGACCCTCAGTGAATGCTTCCC
CTGCTCTGGACCTGGTTTCTTTTGATAATGTGGCCCAGTAAGGAAGACCA
GACTCCTCCAGAGGATCAGTCCTCCTGGCCAAGAATGAACTGTGGGTGGT
TGGTCTCCCCAGGGCGGGAACCTTATTTTTTCCACCTAGGTGGCGTTATT
TTTCCGTTCGAAGTGTAAACAGCATGCCCTCCCTTATTCCCTCTGTTCCC
TCACCTTTTTACTTCTCTCGCAGGTTTTACACCTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_k17.g1 MSMg01no356_k17.g1 CHROMAT_FILE:
MSMg01no356_k17.g1 PHD_FILE: MSMg01no356_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:28 2005
         (445 letters)



>mm_chr13_50188117_50188961
          Length = 845

 Score =  837 bits (433), Expect = 0.0
 Identities = 442/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcccaggcatctctttgcctatgggctctgaggaacaactctctaacaggcctggtac 60
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 645 cttcccaggcatctctttgcctatgggctctgaggaacgactctctaataggcctggtac 586

                                                                       
Query: 61  ttagctaggggctctaagtgtgggacctccagaccatcacggtctcagactgacttctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttagctaggggctctaagtgtgggacctccagaccatcacggtctcagactgacttctgt 526

                                                                       
Query: 121 gagggcagagagtaggcctcaactgtgtgcactgtggagggggagggaattactatgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gagggcagagagtaggcctcaactgtgtgcactgtggagggggagggaattactatgaga 466

                                                                       
Query: 181 cctggttctgcctgttgttttctttaacagtaggagaaatatgaacttgttcctaatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cctggttctgcctgttgttttctttaacagtaggagaaatatgaacttgttcctaatgtg 406

                                                                       
Query: 241 cagaagcctggtggatcaggagagatggacctggaagcaataccaccttgatgttgttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cagaagcctggtggatcaggagagatggacctggaagcaataccaccttgatgttgttgt 346

                                                                       
Query: 301 catttgcatcatgtgagggaagaatttcctggtgcctgggcaatcagaccgctggaaacc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 345 catttgcatcatgtgagggaagaatttcctggtgcctgggcaatcagacctctggaaacc 286

                                                                       
Query: 361 ctggcattggcagcactaagtattggtttggaatccactgccacacttttagatgaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctggcattggcagcactaagtattggtttggaatccactgccacacttttagatgaggaa 226

                                    
Query: 421 gtcagcaggagacaagtctgctaca 445
           |||||||||||||||||||||||||
Sbjct: 225 gtcagcaggagacaagtctgctaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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