Query= MSMg01no357_a13.b1 MSMg01no357_a13.b1 CHROMAT_FILE:
MSMg01no357_a13.b1 PHD_FILE: MSMg01no357_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:56 2005
(560 letters)
>mm_chr13_3527792_3528751
Length = 960
Score = 1071 bits (554), Expect = 0.0
Identities = 558/560 (99%), Gaps = 2/560 (0%)
Strand = Plus / Plus
Query: 1 cattcttccaagatttgctttgaggagcgactgtccagctgtacttgagagtaaagtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcttccaagatttgctttgaggagcgactgtccagctgtacttgagagtaaagtttg 260
Query: 61 attgaaatcctaaatctttattaaatcaactgtgtttgcagatcacatgcaagaaacacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgaaatcctaaatctttattaaatcaactgtgtttgcagatcacatgcaagaaacacc 320
Query: 121 agttctccattagagagccatgagaaaatcgtttatttaggccacagggtcttaaaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttctccattagagagccatgagaaaatcgtttatttaggccacagggtcttaaaccat 380
Query: 181 gggttgaactctgtgtggaactgcctaaccaaatgtagaagttgtagaaattttggcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggttgaactctgtgtggaactgcctaaccaaatgtagaagttgtagaaattttggcaaa 440
Query: 241 agttaaaaaaaaaaaaagtctgaatgtgaaagtatcaaaaatcaatttaaaattagacac 300
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttaaaaaaaaaaa--gtctgaatgtgaaagtatcaaaaatcaatttaaaattagacac 498
Query: 301 agtgtgacaaatgaaagagtctcaggctgtgcttgactgtgttaaaccatacatatccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtgtgacaaatgaaagagtctcaggctgtgcttgactgtgttaaaccatacatatccaa 558
Query: 361 tgtagcctggttggttgggtttggtttggttggtttgagacagggtctgtctgtgtagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtagcctggttggttgggtttggtttggttggtttgagacagggtctgtctgtgtagtt 618
Query: 421 ttggctatctagaacttactatgtggatcaggctggcctcaaactcacagagatcctcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttggctatctagaacttactatgtggatcaggctggcctcaaactcacagagatcctcat 678
Query: 481 gcctctgccacccgagtgctgggattgaagcttgtatcactgtgcccagccagccttgtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcctctgccacccgagtgctgggattgaagcttgtatcactgtgcccagccagccttgtc 738
Query: 541 tacgtgtgcacacttcctgg 560
||||||||||||||||||||
Sbjct: 739 tacgtgtgcacacttcctgg 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_a13.g1 MSMg01no357_a13.g1 CHROMAT_FILE:
MSMg01no357_a13.g1 PHD_FILE: MSMg01no357_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:56 2005
(421 letters)
>mm_chr13_3673155_3673975
Length = 821
Score = 770 bits (398), Expect = 0.0
Identities = 413/418 (98%)
Strand = Plus / Minus
Query: 1 atttagggtgcactatctactcatataggaaagtatattagaagggggcacattcctgag 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atttagggtgcactatatactcatataggaaagtatattagaagggggcacattcctgag 559
Query: 61 catggtcagtttatagccatggtttaagaagaaaaagacaatggatacccttctgagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 catggtcagtttatagccatggtttaagaagaaaaagacaatggatacccttctgagcat 499
Query: 121 gctttgcttatgacaatgtatggggtatgtgtttgaaagactaagatggagggcaagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 498 gctttgcttatgacaatgtatggggtatgtgtttgaaagactaagatggagggcaggaat 439
Query: 181 gcctttggaattggtcagtcggtttataccacacagagagtggacaagaatgcctctgga 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcctttggaattggtcagtcggcttataccacacagagagtggacaagaatgcctctgga 379
Query: 241 gagagagggagagagagagctctgaaggtgtgtctaatgatgactgcctcactgagtggc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagagagggatagagagagctctgaaggtgtgtctaatgatgactgcctcactgagtggc 319
Query: 301 tagcatctcctttgccaaagcaaggtaagctaggcaatccttcaattgttcaatgaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tagcatctcctttgccaaagcaaggtaagctaggcaatccttcaattgttcaatgaaaca 259
Query: 361 attttctttgaacagctgcccctccccccacctcccacagcccttgtgtgtgtgtgtg 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 258 attttctttgaacagctgcccctctccccacctcccacagcccttgtgtgtgtgtgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
