Query= MSMg01no357_d22.b1 MSMg01no357_d22.b1 CHROMAT_FILE:
MSMg01no357_d22.b1 PHD_FILE: MSMg01no357_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:11 2005
(465 letters)
>mm_chr13_39273977_39274841
Length = 865
Score = 876 bits (453), Expect = 0.0
Identities = 459/461 (99%)
Strand = Plus / Plus
Query: 5 gaattctctttaaagttaaaaggatgtttgctctgtattaggtgggcccaaagtcttagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttaaagttaaaaggatgtttgctctgtattaggtgggcccaaagtcttagt 264
Query: 65 ttataactgggaaagttcgacagtttttccttattgtttttagagggggtaggctttctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttataactgggaaagttcgacagtttttccttattgtttttagagggggtaggctttctg 324
Query: 125 tctttcaactcataacatataaatacttcacattgttctattcttgatgcccccctccaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctttcaactcataacatataaatacttcacattgttctattcttgatgcccccctccaa 384
Query: 185 accacatttgatagcagttcaactgttccttgaaaatttaaatttactgcatgtaccaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accacatttgatagcagttcaactgttccttgaaaatttaaatttactgcatgtaccaga 444
Query: 245 aaggttgtattcaaatcatcttgtgcaactcttcggtgagctctttgctacctcctggct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggggttgtattcaaatcatcttgtgcaactcttcggtgagctctttgctacctcctggct 504
Query: 305 gtcatctaaaggagaaaagtaaggcaacttctccagagagaaccgagatgttactgtaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcatctaaaggagaaaagtaaggcaacttctccagagagaaccgagatgttactgtaga 564
Query: 365 gatggctggtgttttgcagaaaatttccgagatatccatcggtcaaaatatcactgacca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatggctggtgttttgcagaaaatttccgagatatccatcggtcaaaatatcactgacca 624
Query: 425 aatgcttttgaagtgttcactccatggagagtacaggccca 465
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgcttttgaagtgttcactccatggagagtacaggccca 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_d22.g1 MSMg01no357_d22.g1 CHROMAT_FILE:
MSMg01no357_d22.g1 PHD_FILE: MSMg01no357_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:11 2005
(399 letters)
>mm_chr13_39462599_39463396
Length = 798
Score = 733 bits (379), Expect = 0.0
Identities = 394/399 (98%), Gaps = 5/399 (1%)
Strand = Plus / Minus
Query: 1 ctcttatgaaaacatcctaaaattgccaggaaatgaacacaatttgaagcagtcctccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctcttatgaaaacatcctaaaattgccaggaaatgaacacaatttgaagcagtcctccac 537
Query: 61 atacattagagaaaatggtatgctaaaaaaac-aaaac-aaaacaaacaaacaaacaaaa 118
|||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||| ||||
Sbjct: 536 atacattagagaaaatggtatgctaaaaaaacaaaaacaaaaac-aac-aacaaa-aaaa 480
Query: 119 aaaacacacttcttttcaattttcccaagtagtcaatatggaaaatctgcaagacttgac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaaacacacttcttttcaattttcccaagtagtcaatatggaaaatctgcaagacttgac 420
Query: 179 atttcaaaaataaagtaaaatattactgaaatgtagtttggatctaattgcaatctttct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atttcaaaaataaagtaaaatattactgaaatgtagtttggatctaattgcaatctttct 360
Query: 239 tgggaagtacagaatagtacacacactaggccaggtgtgtttgttttattgaatctttac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgggaagtacagaatagtacacacactaggccaggtgtgtttgttttattgaatctttac 300
Query: 299 ggctgtgatatataatgccttaaaatgcagttagagacatacacatacattagattaatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggctgtgatatataatgccttaaaatgcagttagagacatacacatacattagattaatg 240
Query: 359 tcctcagcctatctctataatatcatattaaaactttgt 397
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tcctcagcctatctctataatatcatattaaaactttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 798
Length adjustment: 9
Effective length of query: 390
Effective length of database: 789
Effective search space: 307710
Effective search space used: 307710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
