BAC Information

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BAC

Clone NameMSMg01-357K06
Chromosome13 (Build37)
Map Location 25,908,452 - 26,050,367
singlet/doubletdoublet
Overlap genenone
Upstream geneThem2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357K06.T7 (MSMg01no357_k06.b1)MSMg01-357K06.TJ (MSMg01no357_k06.g1)
ACCAG467490AG467491
length739748
length of high quality
(start - end)		556 (46 - 601)480 (78 - 557)
definitionCHROMAT_FILE: MSMg01no357_k06.b1 PHD_FILE: MSMg01no357_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:41 2005CHROMAT_FILE: MSMg01no357_k06.g1 PHD_FILE: MSMg01no357_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,049,816 - 26,050,367)(25,908,452 - 25,908,930)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAGGTGACTTGGGATGACCTGCTGCCTTGATAGGATTTCAGC
TTCCAGCAGCTCTCCGCACTCAGCTTGACCTCCTTTCCTACCTTTGACAT
TGATATATCCTTAAGATTTTAGCTATATGATCTGTGTTTGAACCTGAGAT
TAAAGTTGGAAATAACATTCACCATAATGCCTTTACTTGTAAGTTGATGT
GCTGGCCCTGCAGTATCCCCTGGTACTAATGAGACACCACTGAAGGGTAC
ATTTTGAAAACAAGATCTTCAGGGACGTGAGTCATGATGGAGCAACTGCA
GAAGGTTGAAAGCGAAGTGATCAGGACACTAAAGATTGCTCCTGAATAAT
GAAAGGATACCAGAAAGAGCTGCTAAAACGGGCTCAAAGCACTTTGCATT
TGATATTGGCTCATCTAATATCTTCAGCCAGAAATAACAAAACCCTCCTT
TCTCTTTCTTGTCATGGGGTGTGCTGAGATGTCTGCCTGGTTTATTTCCA
GTACTCCTTCCAGGCTGCTCTCTTACTGCCAGCTGGCTTTTATCTTCTGT
GCCCTGCCACCAATATAGTCAAGACATATTTTTATTTCTCTGTACTAAGC
GTTAATTTTCTTGACCTCTTGCGATTTTAGTAACCTTTTATCATGATGAA
CTGTTTGTAACAGGTGATTGAAATCTTGGTGGCCTGTTN

NCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAATTTCACAGGAAAGTCTA
TTTCTCTGTGCCCAAGAGCAAAACTCTCAGCCTACTGAGGGGATAGGAAT
AAATAAACAACTAATCTTAACTGCATTTGTTGGTTAGGAACCAAATGCCA
AAAAAGTGGAAAAAAATGTAAAGCTAAATAACAAATAAGCATAAAGCAAA
GAAGACTCAGAAGGGGAGCACATCCTGGACACTAAAGAATTTCTAACTGC
TTAACCTTCCTAACTACAGACAGATAGTACTTGACATAAATTAATCATAG
TATTAGGAAAGTATAATAAAGAAATGTTAGCGATCAAGTATACCCTTCGG
AAGTCAATCGACTAAATAGATGTAAGTTCATGGAACCCTGAAGCTATGCC
TACTTTGTTTAATGATGCACCCACTACAATGGACATAGAGTACACCATGT
TGAGGACATTCAATAATGTTCCTGATTGGCTACTGAATGAATTAATGGTT
TTAACGNAAATGGTGCAATGTACTCTAAAGCAATTACTAGATAAAGTGTT
TTATATAGAATGTGTACAAAAGCATTAGTCTGATTCCTGGGTAAACAAAT
TATAACTTGAGCGGTATAAGATTAGGAGGGGAAAGCAAAGGGGTCTTTTA
ACAAATAACCCACACTGTAGGGTTAAAGCGCATAACTGCGGATGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_k06.b1 MSMg01no357_k06.b1 CHROMAT_FILE:
MSMg01no357_k06.b1 PHD_FILE: MSMg01no357_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:41 2005
         (556 letters)



>mm_chr13_26049612_26050567
          Length = 956

 Score = 1021 bits (528), Expect = 0.0
 Identities = 546/552 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgaaggtgacttgggatgacctgctgccttgataggatttcagcttccagcag 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattcatgaaggggaattgggatgacctgctgccttgataggatttcagcttccagcag 697

                                                                       
Query: 65  ctctccgcactcagcttgacctcctttcctacctttgacattgatatatccttaagattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctctccgcactcagcttgacctcctttcctacctttgacattgatatatccttaagattt 637

                                                                       
Query: 125 tagctatatgatctgtgtttgaacctgagattaaagttggaaataacattcaccataatg 184
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 636 tagctatacgatctgtgtttgaacctgagattaaagttggaaataacactcaccataatg 577

                                                                       
Query: 185 cctttacttgtaagttgatgtgctggccctgcagtatcccctggtactaatgagacacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cctttacttgtaagttgatgtgctggccctgcagtatcccctggtactaatgagacacca 517

                                                                       
Query: 245 ctgaagggtacattttgaaaacaagatcttcagggacgtgagtcatgatggagcaactgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctgaagggtacattttgaaaacaagatcttcagggacgtgagtcatgatggagcaactgc 457

                                                                       
Query: 305 agaaggttgaaagcgaagtgatcaggacactaaagattgctcctgaataatgaaaggata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agaaggttgaaagcgaagtgatcaggacactaaagattgctcctgaataatgaaaggata 397

                                                                       
Query: 365 ccagaaagagctgctaaaacgggctcaaagcactttgcatttgatattggctcatctaat 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 caagaaagagctgctaaaacgggctcaaagcactttgcatttgatattggctcatctaat 337

                                                                       
Query: 425 atcttcagccagaaataacaaaaccctcctttctctttcttgtcatggggtgtgctgaga 484
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aacttcagccagaaataacaaaaccctcctttctctttcttgtcatggggtgtgctgaga 277

                                                                       
Query: 485 tgtctgcctggtttatttccagtactccttccaggctgctctcttactgccagctggctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgtctgcctggtttatttccagtactccttccaggctgctctcttactgccagctggctt 217

                       
Query: 545 ttatcttctgtg 556
           ||||||||||||
Sbjct: 216 ttatcttctgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_k06.g1 MSMg01no357_k06.g1 CHROMAT_FILE:
MSMg01no357_k06.g1 PHD_FILE: MSMg01no357_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:41 2005
         (480 letters)



>mm_chr13_25908252_25909131
          Length = 880

 Score =  888 bits (459), Expect = 0.0
 Identities = 474/479 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaatttcacaggaaagtctatttctctgtgcccaagagcaaaactctcagcctactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaatttcacaggaaagtctatttctctgtgcccaagagcaaaactctcagcctactg 260

                                                                       
Query: 61  aggggataggaataaataaacaactaatcttaactgcatttgttggttaggaaccaaatg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 aggggataggaataaataaacaactaatcttaactacatttgttggttaggaaccaaatg 320

                                                                       
Query: 121 ccaaaaaagtggaaaaaaatgtaaagctaaataacaaataagcataaagcaaagaagact 180
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ccaaaaaagtggaaaaaattgtaaagctaaataacaaataagaataaagcaaagaagact 380

                                                                       
Query: 181 cagaaggggagcacatcctggacactaaagaatttctaactgcttaaccttcctaactac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 cagaaggggagcacatcctggacactaaagaatttctaactgcttaaccttcctaactat 440

                                                                       
Query: 241 agacagatagtacttgacataaattaatcatagtattaggaaagtataataaagaaatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacagatagtacttgacataaattaatcatagtattaggaaagtataataaagaaatgt 500

                                                                       
Query: 301 tagcgatcaagtatacccttcggaagtcaatcgactaaatagatgtaagttcatggaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcgatcaagtatacccttcggaagtcaatcgactaaatagatgtaagttcatggaacc 560

                                                                       
Query: 361 ctgaagctatgcctactttgtttaatgatgcacccactacaatggacatagagtacacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaagctatgcctactttgtttaatgatgcacccactacaatggacatagagtacacca 620

                                                                      
Query: 421 tgttgaggacattcaataatgttcctgattggctactgaatgaattaatggttttaacg 479
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tgttgaggacattcaataatgttcctgattggctactgaatgaagtaatggttttaacg 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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