BAC Information

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BAC

Clone NameMSMg01-358G17
Chromosome13 (Build37)
Map Location 20,254,309 - 20,254,695
singlet/doubletsinglet
Overlap genenone
Upstream geneTcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358G17.T7 (MSMg01no358_g17.b1)MSMg01-358G17.TJ (MSMg01no358_g17.g1)
ACCAG468079AG468080
length754779
length of high quality
(start - end)		468 (38 - 505)390 (64 - 453)
definitionCHROMAT_FILE: MSMg01no358_g17.b1 PHD_FILE: MSMg01no358_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:40 2005CHROMAT_FILE: MSMg01no358_g17.g1 PHD_FILE: MSMg01no358_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GATCAGCTCTGAGCCCCATCTTTTAAGGGGGCTATTTGATTTTCTGGAGT
CCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGAT
TTAAGATAGGTAAAGATCCTTTGACAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCC
ATTTGTCAATCCTCTATCTTAAAGCACAAGCCATTGCTGTTCTATTCAGG
AATTTTTTCCCTGTGCCAATATCTTCGAGACTTTTCCCCACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAG
ATTTGACCTTAGTACAAGGAGAGAGGAATGGGTCGATTCCGATTCTTCTA
CATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTT
TTTCCACTGGATGGNTTTAGATTCCTTGTNCAAGATCAAGTGACCATANG
TGTGTGGGTTCATTTCTGGGGCTTCAATTCTATTCCATTGGGCTACTTGG
CCATCACTATACCAGTACCTTGCGGTTTTTATCACATTGCTCTGTAGTAA
AGTTTTAGGCCGGGATGGTGATTCCCCCNAAGGACTTTAATCTTTGAAAA
AGCTTTTGCTATCCCAGGTTTTTGGTTTTTCCAAGAATTTCCGAATGGCT
TTTC

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTGAAGAACCAAACTGAACCAAACTGACACATCAAC
ATGGGTGAAACCAAAAGTGTGATGCTGATGTTAAGCAAACCACTGATATT
TTTCTTGGAGGGGGGAGGATTGCATTTTTTAAAGTTGAAAAATGTATTCT
TTGTATTTACGTAACCTTAAAGAAAAGTTTTTTTAAAAAGTCACTAAAAT
AGTATTCTGAGTCATTCTTATTTGAATCACTTACTGGTGATGATCTATGT
ATTAGGCTGTGTTGTCAGAATCAAGATATGTGTCTCTTTTAATGTATTTG
CATACTCATTGAAAATTCAAATTCCATCACCATTTATTATCAATTGTAGC
TTTTGGTTTTGATTTGCCAGGAAAGTTTACTTATGTAAAGCAAGAAACAA
GCATAACAAAGAAGGAGGCCTCCCTACACTAATAAATATGAAAAAACCCT
TATGCTCCCTTGAATGTATTTAAATTAGTAGTAGCCCTGTCTCACAAAAC
TCTGACAAGGGAAAAAATCTCTTAATGGCCTACAAACGCCCTCCCTTTCC
CAAGGTGGTAAAAGTTCCAAATTTTCCAAAATGGACAGCTTAAAATATCC
CCTATTATACACCATCTGGGTAAATTGAATACTACTTACAATTATCATTT
CCCCACCCCTTAAAAGTCCTCTTTCCTGGAAAGTCCCGCACTTGTCCCTT
CTTGGTTCTTATATTTCTTGTTTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_g17.g1 MSMg01no358_g17.g1 CHROMAT_FILE:
MSMg01no358_g17.g1 PHD_FILE: MSMg01no358_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:40 2005
         (390 letters)



>mm_chr13_20254109_20254897
          Length = 789

 Score =  735 bits (380), Expect = 0.0
 Identities = 386/388 (99%), Gaps = 1/388 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaagaaccaaactgaaccaaactgacacatcaacatgggtgaaaccaaaagtgtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tctgaagaaccaaactgaaccaaactgacacatcaacatgggtgaaaccaaaagtgtgat 528

                                                                       
Query: 61  gctgatgttaagcaaaccactgatatttttcttggaggggggaggattgcattttttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gctgatgttaagcaaaccactgatatttttcttggaggggggaggattgcattttttaaa 468

                                                                       
Query: 121 gttgaaaaatgtattctttgtatttacgtaaccttaaagaaaagtttttttaaaaagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gttgaaaaatgtattctttgtatttacgtaaccttaaagaaaagtttttttaaaaagtca 408

                                                                       
Query: 181 ctaaaatagtattctgagtcattcttatttgaatcacttactggtgatgatctatgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctaaaatagtattctgagtcattcttatttgaatcacttactggtgatgatctatgtatt 348

                                                                       
Query: 241 aggctgtgttgtcagaatcaagatatgtgtctcttttaatgtatttgcatactcattgaa 300
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 347 aggctctgttgtcagaatcaagatatgtgtctc-tttaatgtatttgcatactcattgaa 289

                                                                       
Query: 301 aattcaaattccatcaccatttattatcaattgtagcttttggttttgatttgccaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aattcaaattccatcaccatttattatcaattgtagcttttggttttgatttgccaggaa 229

                                       
Query: 361 agtttacttatgtaaagcaagaaacaag 388
           ||||||||||||||||||||||||||||
Sbjct: 228 agtttacttatgtaaagcaagaaacaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 789
Length adjustment: 9
Effective length of query: 381
Effective length of database: 780
Effective search space:   297180
Effective search space used:   297180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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