XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGATT
TTATTTACCCAATATACACAAACAAGTATATTTTTCACAAGCCTGGATCT
TGTAATGAACCACTATGTGCTTACTATACATATTCATTTTATTATAATGA
AATTATGTAAATTTTAACCAGATTAAACTCTCTTACTTGTCGTCTGAGAT
AGATTTTTACATCTCCTATCATAATGAACTTTGACTAGTACTTCTTTCAC
AAAGATGTTTTATATATTTGATAATTAGAGCTAAAGAGATTGTTCAATGG
TTATGAACATTTGTTGCTCTCCCGTGGACTCAAGTTAGGCTGGCAGCCAT
ACTAGGCAGCTCACAATGCCTGCAGTATTATTTCCCAAGGATCCAATACT
CTCCTCTGTCTTCCATGGGCAACAGCACTCAGATCGAATTTAGTCATATA
TGTACACAATTCACACATAAACAATAGCAATACATTTTAAAATAAATATA
TAATAACTAACCAAATATTTTTTACATACAAAGAAAAGGCTTTTTCTATA
CTTTAAAGAGGAAGCATACGTACTCCATGACATTTTTCTGTTTTATTGGT
CACCTTATTCCCACTAACTCGGTGTCACAGTAGTACTTGAATAAAGTAGT
ACTTGTATGCATATTAACAGTTATATTCTAAATTAAAGTCTCTTCTTGCT
GTTAAAAGGTACTCCACTTATACTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCACCTGAGGAATACCGAATCCCTGAGAAGCACCTGAAA
AAAATGTTCAACATCCTTAATCATCAGAGAAATACAAATCAAAACAACCC
TGAGATTCCATCTCACACCAGTCAGAATGACTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTGCTACCAGAAGATCCAGCAATACCTCTT
CTGGGCATATATCCAGAAGATGCCCTAACCGGTAAGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTTAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACA
CAATGATGTACTACTCAGCTATTAAAAAGAATGAATTTGTGAAATTCCTA
GGCAAATGGTTGGACCTGGAGGGCATCATCTTGAGTGAGGTAACACAATC
ACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTACCCCA
CAACTTAGTATAGTGAGATATAAGGCACATCTGGCAAACACATGAAACTG
AAAAAGAATGAGATTTAAGTGTG

Query= MSMg01no359_b03.b1 MSMg01no359_b03.b1 CHROMAT_FILE:
MSMg01no359_b03.b1 PHD_FILE: MSMg01no359_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:29 2005
         (569 letters)



>mm_chr13_79460078_79461050
          Length = 973

 Score = 1058 bits (547), Expect = 0.0
 Identities = 562/569 (98%), Gaps = 4/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgattttatttacccaatatacacaaacaagtatatttttcacaagcctggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgattttatttacccaatatacacaaacaagtatatttttcacaagcctggat 264

                                                                       
Query: 65  cttgtaatgaaccactatgtgcttactatacatattcattttattataatgaaattatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgtaatgaaccactatgtgcttactatacatattcattttattataatgaaattatgt 324

                                                                       
Query: 125 aaattttaaccagattaaactct----cttacttgtcgtctgagatagatttttacatct 180
           |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||
Sbjct: 325 aaattttaaccagattaaactctatctcttacttgtcgtctgagatagatttttacatct 384

                                                                       
Query: 181 cctatcataatgaactttgactagtacttctttcacaaagatgttttatatatttgataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctatcataatgaactttgactagtacttctttcacaaagatgttttatatatttgataa 444

                                                                       
Query: 241 ttagagctaaagagattgttcaatggttatgaacatttgttgctctcccgtggactcaag 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttagagctaaagagatggttcaatggttatgaacatttgttgctctcccgtggactcaag 504

                                                                       
Query: 301 ttaggctggcagccatactaggcagctcacaatgcctgcagtattatttcccaaggatcc 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaggctggcagccatactaggtagctcacaatgcctgcagtattatttcccaaggatcc 564

                                                                       
Query: 361 aatactctcctctgtcttccatgggcaacagcactcagatcgaatttagtcatatatgta 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 aatactctcctctgtcttccatgggcaacagcactcagattgaatttagtcatatatgta 624

                                                                       
Query: 421 cacaattcacacataaacaatagcaatacattttaaaataaatatataataactaaccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacaattcacacataaacaatagcaatacattttaaaataaatatataataactaaccaa 684

                                                                       
Query: 481 atattttttacatacaaagaaaaggctttttctatactttaaagaggaagcatacgtact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atattttttacatacaaagaaaaggctttttctatactttaaagaggaagcatacgtact 744

                                        
Query: 541 ccatgacatttttctgttttattggtcac 569
           |||||||||||||||||||||||||||||
Sbjct: 745 ccatgacatttttctgttttattggtcac 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 973
Length adjustment: 10
Effective length of query: 559
Effective length of database: 963
Effective search space:   538317
Effective search space used:   538317
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)