BAC Information

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BAC

Clone NameMSMg01-359B07
Chromosome13 (Build37)
Map Location 42,292,484 - 42,470,154
singlet/doubletdoublet
Overlap geneEdn1
Upstream geneElovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1
Downstream geneHn1-ps4, Phactr1, Tbc1d7, Gfod1, Sirt5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359B07.T7 (MSMg01no359_b07.b1)MSMg01-359B07.TJ (MSMg01no359_b07.g1)
ACCAG468582AG468583
length747750
length of high quality
(start - end)
530 (30 - 559)441 (59 - 499)
definitionCHROMAT_FILE: MSMg01no359_b07.b1 PHD_FILE: MSMg01no359_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:30 2005CHROMAT_FILE: MSMg01no359_b07.g1 PHD_FILE: MSMg01no359_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,292,484 - 42,293,009)(42,469,714 - 42,470,154)
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGACAGAGC
AGCTCATGCCTGGTGAGGGACAACTTCATGAAGTGTCACAACGGAAGCAC
GATGGTCAGGAGAGAAGAAGAAGAAGAAAGAGTGAAAATTCAAAAATGCA
TCTGCGTTTATAACCAGTTGCAATTCATGTACGAGGGTGGAGCCTTCATT
TCCTAAGAACCCCCAATCTTGTTGCCTTTGTGTCTGATACCTGCTTTGAG
GGAGAATCTATTCAAACCAAAGTATTTAGACCACAGGGCTTCCACTCATT
TTCTGTTAGTGGCAATGAAGTTTAGAATGCACAAACATTTGGCTGAGGTG
GTCTTCTAGTGTGTATTTGTATACCCAATTCTAGCTACAAGGATCATTAC
TGGATGAGGTAAGTGAATGCATTGAAATTGAAATTCAGTTGTTTTCTTGG
CAAGATGTGTTTGTAGTGATTCACAAACTTTAATCTGTACCCACTGGAAA
TTAAAAGTCCTTCATTTTATAAACTATAATTATAAACATTCAATATTTTG
AAAGGGGAAGATGGGTCCATTCATACCAGGGATTTAGCAATCACCCGGCG
ACTCCTTCTAATTGTAGCTTCGGTAAGATAACCATTGTTTCTAAATTCTT
AACAAGCATTTAAAAAAAAGGTGCTAGATTAAAAAGGAAAAAGGGACCCC
TGGGTCCCGGTTTTTTTTTTTAGGAACCAGGGACCACCCGCGGGCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAGGGAAACTACTCTAGAGACCCAAGTCCCCTGTCATCCAGA
CTGCTAATAACTGGGCACCTTTGTGAGTTCACTGAGGTCCTCTGGGTTCA
ACTACCACATGCTTAGCCCCCAAATTTGGGGCAAAAACCAACCCTGCAGT
CCCAAGTCGGTTCCCTAAAAAGACAGGCTGATTTCCAGATTTTCTTGCAT
GATTGGGAAGAGACCATGCCAGGGAAATCCCTCTTCAGAAGCAGTCTGGT
CACATTCTTGACTAATGAGCTTGGAACACAGTGTCCCTGCTTGGCATTAA
CAGGGAAGACTTGAGGGAGGGGAAGTGTGAAAAAGTACAGGGTGTGATGG
AGTGGAAGCCACACTCAGCGCAGACCCAGACCCATGGGGAAACCCCCAGG
GTATTTCCTTCACCTGTGCCTGGTGAGAAATCCGTAGCCATTGACGCGAA
CATAGCACAACCGCAAGCCAATGCCCAAGACCATTAATGATGGGGAGTGC
AGTCAGCTTCCCATTTGTCCACCGTAGCCCTGGGGAGGATGGACAAAACA
CCAAAAACCCCTGGCCTCCTCCCCAGGAGGTTGTGTAAGGTTTTTTCAAG
GAAAGGGAAGGGGATTTCTTCCCTGTGCAGCTCCCCCTTAAAAAAAAAGC
ACTGGTCCGGAAAACACGGAGGGGGGAAAAAAGATGAGATTATCGTCACG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_b07.b1 MSMg01no359_b07.b1 CHROMAT_FILE:
MSMg01no359_b07.b1 PHD_FILE: MSMg01no359_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:30 2005
         (530 letters)



>mm_chr13_42292280_42293209
          Length = 930

 Score =  978 bits (506), Expect = 0.0
 Identities = 521/526 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgacagagcagctcatgcctggtgagggacaacttcatgaagtgtcacaacg 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgacagagcagctcatgcccggtgagggacaacttcatgaagtgtcacaacg 264

                                                                       
Query: 65  gaagcacgatggtcaggagagaagaagaagaagaaagagtgaaaattcaaaaatgcatct 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagcacgctggtcaggagagaagaagaagaagaaagagtgaaaattcaaaaatgcatct 324

                                                                       
Query: 125 gcgtttataaccagttgcaattcatgtacgagggtggagccttcatttcctaagaacccc 184
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 325 gcgtttataaccagttgcaatttatgtacgagggtggagccttcatttcctaagaatccc 384

                                                                       
Query: 185 caatcttgttgcctttgtgtctgatacctgctttgagggagaatctattcaaaccaaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatcttgttgcctttgtgtctgatacctgctttgagggagaatctattcaaaccaaagt 444

                                                                       
Query: 245 atttagaccacagggcttccactcattttctgttagtggcaatgaagtttagaatgcaca 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attaagaccacagggcttccactcattttctgttagtggcaatgaagtttagaatgcaca 504

                                                                       
Query: 305 aacatttggctgaggtggtcttctagtgtgtatttgtatacccaattctagctacaagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacatttggctgaggtggtcttctagtgtgtatttgtatacccaattctagctacaagga 564

                                                                       
Query: 365 tcattactggatgaggtaagtgaatgcattgaaattgaaattcagttgttttcttggcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcattactggatgaggtaagtgaatgcattgaaattgaaattcagttgttttcttggcaa 624

                                                                       
Query: 425 gatgtgtttgtagtgattcacaaactttaatctgtacccactggaaattaaaagtccttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatgtgtttgtagtgattcacaaactttaatctgtacccactggaaattaaaagtccttc 684

                                                         
Query: 485 attttataaactataattataaacattcaatattttgaaaggggaa 530
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attttataaactataattataaacattcaatattttgaaaggggaa 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no359_b07.g1 MSMg01no359_b07.g1 CHROMAT_FILE:
MSMg01no359_b07.g1 PHD_FILE: MSMg01no359_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:30 2005
         (441 letters)



>mm_chr13_42469514_42470354
          Length = 841

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggaaactactctagagacccaagtcccctgtcatccagactgctaataactgggcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aagggaaactactctagagacccaagtcccctgtcatccagactgctaataactgggcac 582

                                                                       
Query: 61  ctttgtgagttcactgaggtcctctgggttcaactaccacatgcttagcccccaaatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctttgtgagttcactgaggtcctctgggttcaactaccacatgcttagcccccaaatttg 522

                                                                       
Query: 121 gggcaaaaaccaaccctgcagtcccaagtcggttccctaaaaagacaggctgatttccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gggcaaaaaccaaccctgcagtcccaagtcggttccctaaaaagacaggctgatttccag 462

                                                                       
Query: 181 attttcttgcatgattgggaagagaccatgccagggaaatccctcttcagaagcagtctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 attttcttgcatgattgggaagagaccatgccagggaaatccctcttcagaagcagtctg 402

                                                                       
Query: 241 gtcacattcttgactaatgagcttggaacacagtgtccctgcttggcattaacagggaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gtcacattcttgactaatgagcttggaacacagtgtccctgcttggcattaacagggaag 342

                                                                       
Query: 301 acttgagggaggggaagtgtgaaaaagtacagggtgtgatggagtggaagccacactcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acttgagggaggggaagtgtgaaaaagtacagggtgtgatggagtggaagccacactcag 282

                                                                       
Query: 361 cgcagacccagacccatggggaaacccccagggtatttccttcacctgtgcctggtgaga 420
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 281 cgcagacccagacccgtggggaaacccccggggtatttccttcacctgtgcctggtgaga 222

                                
Query: 421 aatccgtagccattgacgcga 441
           |||||||||||||||||||||
Sbjct: 221 aatccgtagccattgacgcga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)