BAC Information

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BAC

Clone NameMSMg01-360C09
Chromosome13 (Build37)
Map Location 33,248,754 - 33,249,304
singlet/doubletsinglet
Overlap geneSerpinb9c
Upstream geneGmds, Wrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301
Downstream geneSerpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360C09.T7 (MSMg01no360_c09.b1)MSMg01-360C09.TJ (MSMg01no360_c09.g1)
ACCAG469394AG469395
length741761
length of high quality
(start - end)
552 (66 - 617)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no360_c09.b1 PHD_FILE: MSMg01no360_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:49 2005CHROMAT_FILE: MSMg01no360_c09.g1 PHD_FILE: MSMg01no360_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAGTGTTCCCTGCAAAGAGCCTATTGGCCATTCTGAAGGTGTACTTT
CTGGTTGGCTTCTTCAGGATATTGAGAATCCACAGGAAGCTCTGATGAAT
GTCTATTGCTGTGTTTAAGCCAATTGCCTGTGAAGGGAAAGACAAACATG
AACTCAATTATGAAACAATTTGGTTGCAAATGGAGTTTACAAGCTGAAGA
GATAGCTCAGACAGTGGTGTATAGGAGGCTCTGATCAAAGCAGCTTGGTA
ATGGAACAATTAAAAGTCTTTATTTGATCTCCTTTGCCAATGAATAATTA
TAAGTCTGTTGCTCAGAAAACATGAAAGATTTCAACAACCCATGTTTAAA
ATAATTCCAACATTTTTCACATTGCAGTCCTCAGGACTGACACTAGGACC
TAAGGTGCACAAGAGTTCTGCACCTCCATGATAAAATTAATACAAATCAA
TAAAACAACAATAATGACAACATCAGCAACAAAACAACATTTCATTTGAA
ATTAACTCCCTCAGGCTACCCTTTAACTATGTATCCTCTTACTTCAGTCT
CTTTCATATTTGGAATTAAAGGCCTATGTTAATAGCACATGCATGGGACT
TTTTGTACCATTTTCTCAGTGTAGCCTGGATTACATTTTGATAGTTCCCT
TTATTTTATTACTCACGAACATTATTACCTTACCCAACTTA
ATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCAATCCATGGCTTTTCTCATGAA
GGGGTGTTGGATTTTTGTCAAATGCTTTCACAGCATCTAATGAAATGATA
ATGTGATTTTTGTCTTTGAGTTTGTCTATATAGTGGATTACGTTGATAAA
TTTCCGTATATTAAACCATCCCTGCATCCCTGGGATGAAGCCTACTTGGT
AATGATGGATGATCCTTTTGATGTGTTTTTGGATTTGGTTTGCAAGGATT
TTATTGAGTATTTTGTTTTCTTATATTAATAAGAGAAATTGATCTGAAGT
TCTCCTTCTTTGTTGGATCTTAGTGTGGCTTAGGTATCAGAGTAATTGTG
GCTTCATAGAATGAATTGGGAAGAGTACCTTCTGTATCTATTTTGTGTAA
TCATTTGACGAGAGTTGGAATTAGGTCTCCTTTGGAGGTCTAATAGAATT
CTGCACTAAATCCATCTGGCCCTGGACTTTTGGAGGGGGGCTTGCGAGAC
TATTAATGACTGCTTCTATTTCTTTAGGGGAAACGGGACTGTTCAAATCC
TTATTCTGATCCTGATTTTACTTTGATACCCTGGAACCTGTCTAGGTATC
TTTTCCCATTTTTTCCTAGGTTTTCTCGTTTCTGTTTGCCTCTATCCCCT
TTCTTACCATTTATCCTGAAGAAGTTTCTTCGTTCCTCCTTCACCGTCCT
TTTTCGCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_c09.b1 MSMg01no360_c09.b1 CHROMAT_FILE:
MSMg01no360_c09.b1 PHD_FILE: MSMg01no360_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:49 2005
         (552 letters)



>mm_chr13_33248554_33249504
          Length = 951

 Score =  998 bits (516), Expect = 0.0
 Identities = 543/552 (98%), Gaps = 1/552 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagagcctattggccattctgaaggtgtactttctggttggcttcttcaggatattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagagcctattggccattctgaaggtgtactttctggttggcttcttcaggatattga 260

                                                                       
Query: 61  gaatccacaggaagctctgatgaatgtctattgctgtgtttaagccaattgcctgtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatccacaggaagctctgatgaatgtctattgctgtgtttaagccaattgcctgtgaag 320

                                                                       
Query: 121 ggaaagacaaacatgaactcaattatgaaacaatttggttgcaaatggagtttacaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaagacaaacatgaactcaattatgaaacaatttggttgcaaatggagtttacaagct 380

                                                                       
Query: 181 gaagagatagctcagacagtggtgtataggaggctctgatcaaagcagcttggtaatgga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gaagagatagctcagacagtggtgtataggaggctctgatcaaagcagcttgttaatgga 440

                                                                       
Query: 241 acaattaaaagtctttatttgatctcctttgccaatgaataattataagtctgttgctca 300
           ||||||||||| |   | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaattaaaag-caggaattgatctcctttgccaatgaataattataagtctgttgctca 499

                                                                       
Query: 301 gaaaacatgaaagatttcaacaacccatgtttaaaataattccaacatttttcacattgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaaaacatgaaagatttcaacaacccatgtttaaaataattccaacatttttcacattgc 559

                                                                       
Query: 361 agtcctcaggactgacactaggacctaaggtgcacaagagttctgcacctccatgataaa 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 agtcctcaggactgacactaggacctaaggtggacaagagttctgcacctccatgataaa 619

                                                                       
Query: 421 attaatacaaatcaataaaacaacaataatgacaacatcagcaacaaaacaacatttcat 480
           ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 attaaaacaaatcaataaaacaacaataatgacaacatcagcaataaaacaacatttcat 679

                                                                       
Query: 481 ttgaaattaactccctcaggctaccctttaactatgtatcctcttacttcagtctctttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgaaattaactccctcaggctaccctttaactatgtatcctcttacttcagtctctttc 739

                       
Query: 541 atatttggaatt 552
           ||||||||||||
Sbjct: 740 atatttggaatt 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space:   510022
Effective search space used:   510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)