Query= MSMg01no360_c12.b1 MSMg01no360_c12.b1 CHROMAT_FILE:
MSMg01no360_c12.b1 PHD_FILE: MSMg01no360_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:50 2005
(270 letters)
>mm_chr13_105648029_105648698
Length = 670
Score = 468 bits (242), Expect = e-136
Identities = 248/250 (99%)
Strand = Plus / Plus
Query: 21 cattgtaaggtgaatctttaaacaacattcattttgaacagtgtgacctgttgcccagct 80
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cattgtaaggtgaatctttaagcaacattcattttgaacagtgtgacctgttgcccagct 280
Query: 81 tagagttattcttttggctatggtacaggtagttaactacaaataacagattcagcttac 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tagagttattcttttggctatggtacaggtagttaactacaaataacagattcagcttac 340
Query: 141 cttctagggtagaagatgtctctaggtgctgaagtttaaggccattgtctaatctttgag 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cttctagggtagaagatgtctctaggtgctgaagtttaaggccattgtctaatctttgag 400
Query: 201 gttttgtgtacagaaataagtagcaaaggacacagacactgatgacaaaggcaagtaaga 260
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 401 gttttgtgtacagaaataagtagcagaggacacagacactgatgacaaaggcaagtaaga 460
Query: 261 caagggcagc 270
||||||||||
Sbjct: 461 caagggcagc 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no360_c12.g1 MSMg01no360_c12.g1 CHROMAT_FILE:
MSMg01no360_c12.g1 PHD_FILE: MSMg01no360_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:50 2005
(496 letters)
>mm_chr13_105807062_105807956
Length = 895
Score = 897 bits (464), Expect = 0.0
Identities = 488/496 (98%), Gaps = 1/496 (0%)
Strand = Plus / Minus
Query: 1 taaagttcctggtttcagtttcagaacagttgaacaactcaggagagtaaaaaagatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 taaagttcctggtttcagtttcagaacagttgaacaactcaggagagtaaaaaagatgca 636
Query: 61 gcccggcttataacaccaacacagacaagattaataattgattatagattgatagtttct 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gcccggctcataacaccaacacagacaagattaataattgattatagattgatagtttct 576
Query: 121 tacctttaataaggtccttatgaattaatatttttactgtaaaacactcattgcaaaaca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 575 tacctttaataaggtccttatgaattaatatttttactgtaaaacactcattgcaaaa-a 517
Query: 181 atgtaaaacttacaggaaaagcataaagaggaaaaatgaaatatatcttcatacttacat 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atgtaaaacttacaggaaaaacataaagaggaaaaatgaaatatatcttcatacttacat 457
Query: 241 attctgttctttgtttctccttatatttgagcaagtacacctgccacttgcaattcttgc 300
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 456 attctgttgtttgtttctccttatatttgagcaaatacacctgccacttgcaattcttgc 397
Query: 301 tgtaataattatcttcccacatccttaaactgagaccacttacatgcttttgaggataat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgtaataattatcttcccacatccttaaactgagaccacttacatgcttttgaggataat 337
Query: 361 tgacctgatcctttgttgggaattttattttcactttttcaagtataaataacactttca 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgacctgatcctttgttgagaattttattttcactttttcaagtataaataacactttca 277
Query: 421 aatattcctacatgaaacggtaactatttctgctgacatctataccatcaactctaatga 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aatattcctacatgaaatggtaactatttctgctgacatctataccatcaactctaatga 217
Query: 481 aacgcatgctaatatc 496
||||||||| ||||||
Sbjct: 216 aacgcatgccaatatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space: 430110
Effective search space used: 430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
