Query= MSMg01no360_e02.b1 MSMg01no360_e02.b1 CHROMAT_FILE:
MSMg01no360_e02.b1 PHD_FILE: MSMg01no360_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:57 2005
(645 letters)
>mm_chr13_95242895_95243940
Length = 1046
Score = 1187 bits (614), Expect = 0.0
Identities = 635/642 (98%), Gaps = 1/642 (0%)
Strand = Plus / Plus
Query: 5 gaattctctgcatctgtgccagccacatttgtgcgattgcatttgtagctgtgtagattc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgcatcagtgccagccacatttgtgcgattgcatttgtagctgtgtagattc 264
Query: 65 aatttctaaggtatttagtttcaatggattgagctttttctactttgttggagattcgta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatttctaaggtatttagtttcaatggattgagctttttctactttgttggagattcgta 324
Query: 125 agcttcctgtcagtgtttttataaataatttttgctgttcttttcgagaaaagaaaaacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcttcctgtcagtgtttttataaataatttttgctgttcttttcgagaaaagaaaaacc 384
Query: 185 tgtacaaaatgtactgggttttctgatgagctcagttttaggtgatgcttaaaaataagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 tgtacaaaatgtactgggttttctgatgagctcagttttaggtgatgcttacaaataagc 444
Query: 245 agagagcgttgtataccaaagataaccttgacaaggttacagctagaaacgaataataca 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 445 agagagcgttgtataccaaagataaccttgacaaggttacagctagaaacggatagtaca 504
Query: 305 ctttttacatttaaaaaatgccaattatgttttctaaatcttttcttaaatatactggat 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 ctttttacatttaaaaaatgccaattatgttttctaaatcttttcttaaatacactggat 564
Query: 365 gttaggcttgcataatggttactctttactagcattacctatttattgtttcatagtaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttaggcttgcataatggttactctttactagcattacctatttattgtttcatagtaag 624
Query: 425 tttgataatgaaagatattttgcttgtacctagaaattgtgtgaatatattctttgtttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttgataatgaaagatattttgcttgtacctagaaattgtgtgaatatattctttgtttt 684
Query: 485 ttaatttaaatggagcaggtgagaattacattcttaatgtcttcctcatataagtagtgc 544
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttaatataaatggagcaggtgagaattacattcttaatgtcttcctcatataagtagtgc 744
Query: 545 agtgaactagaaattagataatcagaagcctttac-attagctctggtcggaaagctagt 603
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 745 agtgaactagaaattagataatcagaagcctttaccattagctctggtcggaaagctagt 804
Query: 604 tagctaccattagctctggtcggaaagctagttagcttcctt 645
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tagctaccattagctctggtcggaaagctagttagcttcctt 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_e02.g1 MSMg01no360_e02.g1 CHROMAT_FILE:
MSMg01no360_e02.g1 PHD_FILE: MSMg01no360_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:57 2005
(263 letters)
>mm_chr13_95388650_95389313
Length = 664
Score = 503 bits (260), Expect = e-147
Identities = 263/264 (99%), Gaps = 1/264 (0%)
Strand = Plus / Minus
Query: 1 catcccgccgaaaagctgtacctgatgtcgggggactgggtgatatttaagatgtcagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 catcccgccgaaaagctgtacctgatgtcgggggactgggtgatatttaagatgtcagaa 405
Query: 61 atac-tattggattagtgcgctttgtttccccacaacagcaggtgtttaatcatagctga 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atacatattggattagtgcgctttgtttccccacaacagcaggtgtttaatcatagctga 345
Query: 120 tggctgaagttaaacgcattaggacagcaacagcccaagaagatggagtttttctaagcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tggctgaagttaaacgcattaggacagcaacagcccaagaagatggagtttttctaagcc 285
Query: 180 atacaaactccgggataaataactcaaaactaattgtgtgtccacgtcgtagatacattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atacaaactccgggataaataactcaaaactaattgtgtgtccacgtcgtagatacattt 225
Query: 240 ttatttacttaatacattaaacaa 263
||||||||||||||||||||||||
Sbjct: 224 ttatttacttaatacattaaacaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 664
Length adjustment: 9
Effective length of query: 254
Effective length of database: 655
Effective search space: 166370
Effective search space used: 166370
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
