BAC Information

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BAC

Clone NameMSMg01-361O18
Chromosome13 (Build37)
Map Location 12,203,295 - 12,203,809
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039648, Zp4, Ryr2
Downstream geneLOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361O18.T7 (MSMg01no361_o18.b1)MSMg01-361O18.TJ (MSMg01no361_o18.g1)
ACCAG470732AG470733
length761808
length of high quality
(start - end)		515 (69 - 583)76 (77 - 152)
definitionCHROMAT_FILE: MSMg01no361_o18.b1 PHD_FILE: MSMg01no361_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:06 2005CHROMAT_FILE: MSMg01no361_o18.g1 PHD_FILE: MSMg01no361_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGATTATATGTGTAGGTATAATCATGTGTATAACACAAAATAT
ATCATTTTATATGGAGGATACGATCACTGATAGATTTTTGTATTTTCATG
GAGTCTAAAACCCGTCTTCTCTTGATCTATAAGGATCATCGTAGTATAGA
TATAAGTTAAGGACAAATCTGCTAGTTGCTTACTGAATGTTCAACCCCAG
GAACCACACCTCTGCAGAGGCTCAAAACTCAGAAATTCACATCTCTTGGA
GAACCTATACTTTGTCAGGAGCCCAGATCTTTAGGAACACAACTCAAATC
TCTTTAGGATCTCATATCTTAGTAACCAGAATCTCTTCAGGATCTCACAT
CTCCTCAGGAACCCATATCTCATCAAGGTCTCACATCTCAGGAAGCCCTC
TCCTCAGGAATGTATACCTCTTTAGAAACCATCTTCCCAGACATCTATAT
ACTTCTTCACAGCAACTCTCAGCTCTGTAAGAGAGCACTTCTCCTCGGGA
ATGTGTGGCTCCACAGGCACACTCATTTCCTAAGCTCACATTTTCTTTCA
GGAGAGAAGGTGGCTCGTTATGAGCATCCATTTATGGGGAGTCTCTCACT
GCTTTCTGTGACGAGTATAGCTCCTCTGATCCCACGGTGTGCATCATATT
GACTCGATGTCTCCATGTATAGCTCAGTCCTGAACCTTTTAACTCGAGTG
CTGACTATCGN

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTACTTCCCCAGCAATAGGAAGGT
GCACCGTGTGCATTGCAAGGTCATACATTAACTATATTAGTGACTATTGG
CGGCGGTGGGCGTGTAGCTCACCACCTAACATTCCCCCACCTATCGCCCT
TCCCACCCTTTGCCCACCCTCCTTGTCCAACTCTCCTTACCCTCCATTCT
CTCCTTACCCCCCTTTTCGCCATCCACCCCTCCCCTTTCCACTCTCCCCC
CCTCCCTTCTTACCCCTCCACCCTTCCCATCCCCCCCCCCCCCCATCCCC
CTTCCCCCCCCCTTCTCCCCCTTCTTCCCTCCCTTTTTCCTTTCCTCCAC
TTCCTTTTCCCCTCCCTTNCCTTCCNTTNGCTTTTAACCCCCCCCTCCCC
CCTCCCCCCTCCCTCCCCCTTTTCTTTCTCCCCCCTCTTACCCCCCCCCC
CTCCCCCCCCCCTCCCCCTTTATTCTACCCCCCTCCCCCCTCTCTCTCCC
TTTTTTCCCCCTTTCCCCCCCCTCTATCCCCTTTTCCCCCCCTCTCTCCT
TCCCCCCCTCCCCTTCTTCCCGTCTCTTTCTCCCCCCTCCTCCCCCCTTC
CCCCCCCTCCCCCCTCTTCCTCCTTCCCATCCTTCTTCCCCCCCCTTTTC
CCTCTCCTTCTTCCCCCTCCTCCTCATCCTTTTCCCCCCTTCCCCTCCCC
TCTTCTCTCCCTTCCCCCCCCTTCTTCCTCTTCTTCCCCCCTCCCCCCCC
CTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_o18.b1 MSMg01no361_o18.b1 CHROMAT_FILE:
MSMg01no361_o18.b1 PHD_FILE: MSMg01no361_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:06 2005
         (515 letters)



>mm_chr13_12203095_12204009
          Length = 915

 Score =  965 bits (499), Expect = 0.0
 Identities = 511/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaggtataatcatgtgtataacacaaaatatatcattttatatggaggatacgatcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 715 gtaggtataatcatgtgtataacacaaaatatatcattttatatggaggatccgatcact 656

                                                                       
Query: 61  gatagatttttgtattttcatggagtctaaaacccgtcttctcttgatctataaggatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gatagatttttgtattttcatggagtctaaaacccgtcttctcttgatctataaggatca 596

                                                                       
Query: 121 tcgtagtatagatataagttaaggacaaatctgctagttgcttactgaatgttcaacccc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcgtagtatagatgtaagttaaggacaaatctgctagttgcttactgaatgttcaacccc 536

                                                                       
Query: 181 aggaaccacacctctgcagaggctcaaaactcagaaattcacatctcttggagaacctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aggaaccacacctctgcagaggctcaaaactcagaaattcacatctcttggagaacctat 476

                                                                       
Query: 241 actttgtcaggagcccagatctttaggaacacaactcaaatctctttaggatctcatatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 actttgtcaggagcccagatctttaggaacacaactcaaatctctttaggatctcatatc 416

                                                                       
Query: 301 ttagtaaccagaatctcttcaggatctcacatctcctcaggaacccatatctcatcaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttagtaaccagaatctcttcaggatctcacatctcctcaggaacccatatctcatcaagg 356

                                                                       
Query: 361 tctcacatctcaggaagccctctcctcaggaatgtatacctctttagaaaccatcttccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tctcacatctcaggaagccctctcctcaggaatgtatacctctttagaaaccatcttccc 296

                                                                       
Query: 421 agacatctatatacttcttcacagcaactctcagctctgtaagagagcacttctcctcgg 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agacatctatatacctcttcacagcaactctcagctctgtaagagagcacttctcctcgg 236

                                              
Query: 481 gaatgtgtggctccacaggcacactcatttcctaa 515
           ||||| |||||||||||||||||||||||||||||
Sbjct: 235 gaatgcgtggctccacaggcacactcatttcctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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