CTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCGTTGCATAGTTCAAACAGCAGGCCTTGTCCTACAGTAGTGCAG
CCTGATCCATGTGTCTGGCCAGTGGAGCCCAGGTCTCCATACAGCTCAGT
CATTCAAAGCTGCTGCATGAGGTTTCTCTGCACACTAATAAATCTTTGGA
GTGAATTACTCTTTTAAAAAAATCATAAAATGTAATCAGTAACAAGGCTT
AATTGCCTCATTTCTTCATTAATAAAATTTGAACTTATCTTTTATCTAAT
TGATGAGTTTTCCATCTTTTTTTTAATGGCAGTATATAATATAAAACACT
CTTGTTAGGCATTTTATTGAATCTTCAAAAATAATCTGCTTTAAAAATAA
GTGAATATGTTATATATTTTAAATTTATTTCAACAGGGGTTTAAGAATGA
TACTTGTCTCTCATTGTTGAATTAATTCTAGAACGTAAAAATTACACAAG
TACACGAATGTGCTATGTCAATAGTTATTGCTGTAGCACCCTTCCCCTCC
ATAGCAAAGCAGTCCCCCTCTATATGCTTTAGGCCTGTTACCAAACCAAT
TTTCTTCATGCAATTTTTAAATTGTTACCGCCTGCCTCCACCTCACCTGT
GGCAGGATGTTCCCCGCGCCCTTAAAAAATTTTTTCTAATTCTTTGTCAA
TTGCCCCTTGACTCAAACCTTTGATTACCTTCTTTTTCCACGGATGCAGG
CGACTTTTCCCCTCAACAACTCG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCACTAAACCCATGTGGTCCAAGGCT
TTTTTTGGATGGGAGACTAATGAGTGCTTCTACTTCACTGGGGATTATGG
GACTGTCTAGATGGTTTATCTGCTCCTGTTTTAACTTTGGAACCTGTTAT
CTGTCTAGAAAAATGCCCATTTCATCCAGATTTTCCAATTTTGTTGAGTA
TAAGCTTTTGTAATATGATCTGATGATTTTTTTTAATTTCCACGGTTTCC
ATTGTTATGTCTCCCTTTTCATTTCTGATTTTATTAAGTTAGATACTGTC
TCTGAGCCCTCTGGTTAGTCTGGATAAGGGTTTATCTATCTTATTGATTT
TCTCAAAGAACCAGCTTCTGGTTTTCTTGATTCTTCTGAGTTTATTTCCT
GATGTCTACTCTTTTTGAGTGTATTTGCTTCTTTTTGTTTTAGAACTTTC
AGGTATGCTCTCAAGCTGCTAGTGTAAGCTCTCTCAAGATTCTTTTTGGA
GGCACTCAGAGCTATGAGTTTTCCTCTTGCCACTGCTTTCATTGTGTCTC
ATAAGTTTTGGGATGATGTGTCCTCCTTTTCCTTAAGTTCTAAAAGACTT
TAATTTCTTTTCTAGGAGAGATATTTATTTTCTATATGGGAGGACCCTGT
CCATGTCTTCAAACACCCCAAAAAGAGCCAATCTCATCCCTTATTACCGA
TGGGCATACCCCTCGG

Query= MSMg01no362_a02.b1 MSMg01no362_a02.b1 CHROMAT_FILE:
MSMg01no362_a02.b1 PHD_FILE: MSMg01no362_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:12 2005
         (492 letters)



>mm_chr13_15560678_15561571
          Length = 894

 Score =  899 bits (465), Expect = 0.0
 Identities = 484/491 (98%), Gaps = 2/491 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccgttgcatagttcaaacagcaggccttgtcctacagtagtgcagcctgatcca 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaattccgttgcacagttcaaacagcaggccttgtcctacagtagtgcagcctgatcca 506

                                                                       
Query: 64  tgtgtctggccagtggagcccaggtctccatacagctcagtcattcaaagctgctgcatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtgtctggccagtggagcccaggtctccatacagctcagtcattcaaagctgctgcatg 446

                                                                       
Query: 124 aggtttctctgcacactaataaatctttggagtgaattactcttttaaaaaaatcataaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtttctctgcacactaataaatctttggagtgaattactcttttaaaaaaatcataaa 386

                                                                       
Query: 184 atgtaatcagtaacaaggcttaattgcctcatttcttcattaataaaatttgaacttatc 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 atgtaatcagtaacaaggcttaattgcctcattccttcattaataaaatttgaacttatc 326

                                                                       
Query: 244 ttttatctaattgatgagttttccatc--ttttttttaatggcagtatataatataaaac 301
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 325 ttttatctaattgatgagttttccatcttttttttttaatggcagtatataatataaaac 266

                                                                       
Query: 302 actcttgttaggcattttattgaatcttcaaaaataatctgctttaaaaataagtgaata 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actcttgttaggcattttattgaatcttcaaaaataatctgctttaaaaataagtgaata 206

                                                                       
Query: 362 tgttatatattttaaatttatttcaacaggggtttaagaatgatacttgtctctcattgt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgttatatattttaaatttatttcaacaggggtttaagaatgatacttgtctctcattgt 146

                                                                       
Query: 422 tgaattaattctagaacgtaaaaattacacaagtacacgaatgtgctatgtcaatagtta 481
           |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 145 tgaattaattctaggacataaaaattacacaagtacacgaatgtgctatgccaatagtta 86

                      
Query: 482 ttgctgtagca 492
           |||||||||||
Sbjct: 85  ttgctgtagca 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 894
Length adjustment: 10
Effective length of query: 482
Effective length of database: 884
Effective search space:   426088
Effective search space used:   426088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)