BAC Information

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BAC

Clone NameMSMg01-362M07
Chromosome13 (Build37)
Map Location 68,931,992 - 69,083,866
singlet/doubletdoublet
Overlap geneAdcy2, LOC666205
Upstream geneBC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362M07.T7 (MSMg01no362_m07.b1)MSMg01-362M07.TJ (MSMg01no362_m07.g1)
ACCAG471375AG471376
length773779
length of high quality
(start - end)		511 (45 - 555)399 (74 - 472)
definitionCHROMAT_FILE: MSMg01no362_m07.b1 PHD_FILE: MSMg01no362_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:15 2005CHROMAT_FILE: MSMg01no362_m07.g1 PHD_FILE: MSMg01no362_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,931,992 - 68,932,498)(69,083,468 - 69,083,866)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAACATTACAAGTATTTTCCAGGAATCAGTCTCTGGAGATGGACT
CCCAGCTTCTCATACCATTAACAATTGATGGACCAAACTCTATTATATTA
AACATCTTTAACAGATGTTTCTGCTCCCTTAATCTTTCCTCTTGATTATC
TCTTGATTATAAAGGATCTCTGCCTTCTCTTATGAAATTTCCAGTGAATC
TCTTCCCTTCTGCTACCTCCCAAGAGGGTCATATAGTCTCTGGCCCCTGG
TAACCCATGACCCAGAAGCTGGGTGTGGTGACTGTGATCACAAAGACTGC
CAGAACACTTAGGCTCCTTGGCTCAGAGAGACAAGAATGCTATGTTCTTC
CCAAGCTCTGGGCCATGCCAAGGAAATATGATGTGTTGATGATGTCAGTA
GCCTGAATCACTGCTTTTGTCAAAGCTGTGACTATAAACATTAGGCTCTG
TAATCTGCCTACTTGGAATTCAGTTTCCTGTAGTTTTAGTGCTATTTTGA
AATAGAGTCTACAGGCGATGAGAAATAAAGTTAACTGTTTCTATCTGGAC
TAAATTTATGAACCTTCTGTCCTTTGATGTTTTAATTATGTGCTTACTGT
TTTGTTCCCCCTCCCTTTTTTTCACCCACTTTTTTATTCCCTCCACCTCT
TTTTTCTATTCCTCTCCCCTTCTCTCTATATATTTCTCTTCCGCCTCTCC
TCTTCTCCTTTTCTTTTCCCTTC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGTATTTGACATTTGTTCTATTGTTG
GGAACCTTTGGAATGACAGTAACTGTTGGCAGACATATTTTTATGAGGTG
TCGGACTACACTGAGACAGCCATTACACAGCTTTCATCCGGGGTCTCATC
CAGAACTGAGTCTCTCTAGTTCCATGATGTGGTGGCAAACCTGACAGCCC
AGCTTCTACTCCAGTGCCACCAAATGGCTTCTAGAAGTGTCACACGGAAT
GAAAGTATCTTCCTCTGTGGCCCTGCCCTATCCCTAACCGATGATATAAA
TATACCGTTAGTGTTTGAAGTCACTGAGTTCCAGGGTGGTATGCTAGATA
TGGGGTATGTGTCAAGTCTGCTTGGGTCTTGCATCATAACTGGAAAGAGA
TACAAGTTCTGTCATTTAATATACAGTAAAAATAACAGGAACTGCTTTAA
CATTTGACAGAACTAAGTCAAAATAACCACCTCTCAATAACAGGAGTACG
TGTGTTTCTCGGCTATGTTGTTCCCCCCCCCCCCTCTTTTCTCCCTCCTT
CCCCTTTTCCCCCCTCGTCCTCTTTTACCTTTCCCCTCTCCGCCCCCCCC
CTCTTTCCTTCCTCTCTTCCACCCCTCCCTTCCCCTTTATTTTCTTATTC
CTCTCTCGTTTCATTTCCTTTTACTCCCTTTTCCCCCCCCCCGCTTCTTC
CTCTTCTTTTTCTCTTTCTCCCTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_m07.b1 MSMg01no362_m07.b1 CHROMAT_FILE:
MSMg01no362_m07.b1 PHD_FILE: MSMg01no362_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:15 2005
         (511 letters)



>mm_chr13_68931788_68932698
          Length = 911

 Score =  957 bits (495), Expect = 0.0
 Identities = 504/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaacattacaagtattttccaggaatcagtctctggagatggactcccagctt 64
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaacaggaaaagtattttccaggaatcagtctctggagatggactcccagctt 264

                                                                       
Query: 65  ctcataccattaacaattgatggaccaaactctattatattaaacatctttaacagatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcataccattaacaattgatggaccaaactctattatattaaacatctttaacagatgt 324

                                                                       
Query: 125 ttctgctcccttaatctttcctcttgattatctcttgattataaaggatctctgccttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctgctcccttaatctttcctcttgattatctcttgattataaaggatctctgccttct 384

                                                                       
Query: 185 cttatgaaatttccagtgaatctcttcccttctgctacctcccaagagggtcatatagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttatgaaatttccagtgaatctcttcccttctgctacctcccaagagggtcatatagtc 444

                                                                       
Query: 245 tctggcccctggtaacccatgacccagaagctgggtgtggtgactgtgatcacaaagact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctggcccctggtaacccatgacccagaagctgggtgtggtgactgtgatcacaaagact 504

                                                                       
Query: 305 gccagaacacttaggctccttggctcagagagacaagaatgctatgttcttcccaagctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccagaacacttaggctccttggctcagagagacaagaatgctatgttcttcccaagctc 564

                                                                       
Query: 365 tgggccatgccaaggaaatatgatgtgttgatgatgtcagtagcctgaatcactgctttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgggccatgccaaggaaatatgatgtgttgatgatgtcagtagcctgaatcactgctttt 624

                                                                       
Query: 425 gtcaaagctgtgactataaacattaggctctgtaatctgcctacttggaattcagtttcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcaaagctgtgactataaacattaggctctgtaatctgcctacttggaattcagtttcc 684

                                      
Query: 485 tgtagttttagtgctattttgaaatag 511
           |||||||||||||||||||||||||||
Sbjct: 685 tgtagttttagtgctattttgaaatag 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_m07.g1 MSMg01no362_m07.g1 CHROMAT_FILE:
MSMg01no362_m07.g1 PHD_FILE: MSMg01no362_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:15 2005
         (399 letters)



>mm_chr13_69083268_69084066
          Length = 799

 Score =  764 bits (395), Expect = 0.0
 Identities = 398/399 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtatttgacatttgttctattgttgggaacctttggaatgacagtaactgttggcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aagtatttgacatttgttctattgttgggaacctttggaatgacagtaactgttggcaga 540

                                                                       
Query: 61  catatttttatgaggtgtcggactacactgagacagccattacacagctttcatccgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 catatttttatgaggtgtcggactacactgagacagccattacacagctttcatccgggg 480

                                                                       
Query: 121 tctcatccagaactgagtctctctagttccatgatgtggtggcaaacctgacagcccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tctcatccagaactgagtctctctagttccatgatgtggtggcaaacctgacagcccagc 420

                                                                       
Query: 181 ttctactccagtgccaccaaatggcttctagaagtgtcacacggaatgaaagtatcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttctactccagtgccaccaaatggcttctagaagtgtcacacggaatgaaagtatcttcc 360

                                                                       
Query: 241 tctgtggccctgccctatccctaaccgatgatataaatataccgttagtgtttgaagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tctgtggccctgccctatccctaaccgatgatataaatataccgttagtgtttgaagtca 300

                                                                       
Query: 301 ctgagttccagggtggtatgctagatatggggtatgtgtcaagtctgcttgggtcttgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctgagttccagggtggtatgctagatatggggtatgtgtcaagtctgcttgggtcttgca 240

                                                  
Query: 361 tcataactggaaagagatacaagttctgtcatttaatat 399
           ||| |||||||||||||||||||||||||||||||||||
Sbjct: 239 tcagaactggaaagagatacaagttctgtcatttaatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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