BAC Information

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BAC

Clone NameMSMg01-362N05
Chromosome13 (Build37)
Map Location 30,120,619 - 30,121,059
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041135, Cdkal1, E2f3
Downstream geneMboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362N05.T7 (MSMg01no362_n05.b1)MSMg01-362N05.TJ (MSMg01no362_n05.g1)
ACCAG471419AG471420
length872791
length of high quality
(start - end)
114 (65 - 178)441 (71 - 511)
definitionCHROMAT_FILE: MSMg01no362_n05.b1 PHD_FILE: MSMg01no362_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:20 2005CHROMAT_FILE: MSMg01no362_n05.g1 PHD_FILE: MSMg01no362_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
CTAACTTATCACCAAGAGTCGCCAGGAACGAGCCTGCCTAAACTCTACCA
GAGTCATAGAAAGCTGTTCTTGAACTAAGATGAACAGTAGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTCTCCTCCCCTCCCTCCCTT
CTTTCTTCTCCCCTCTTTCTCTTGCCCCCCCCCCTCCCCCCTCCCTCCCC
TCCTCCCTAATTTTTCCCTCCTCCTCCTTTTTCTTCCTTTCCTCCCTCCC
TTTCCTCCCCCCTTCCTCTTCTTCTTCTTTCTTTCCCCCTCCCCCTCTTC
TTCCCCCTCTCTTTCCCTCTCTCTCCCCTCCCCCTTCTCTCTCCTCCTTC
TCCTCCCTTTCTCCTCCTTTCCCCCTTTTCCCCCCCCTCCCCCCTTTCCC
CCCTCTCTCCCTTCCCCCCCCCCCCCCCCCCCCCTCCTCCCTTTCCCCCC
TCCTTTCTCTTTTCCCCCTTCCCCTTCTTCCCCCCTTCCTTCCTCCTCCC
TTCTTCTTCTCCTTCTCCTCCCTCCTTTCTTTTTCTCCCCCCCCTCTTTT
CTTCTCCCCCTTCCTCTCTTCTTCTCTCCCCCCCTTTCCTCCCCTCCTTA
TTTTCCTCCCTCCCCCTCCCCCCCCTCTTCCCCCTCTCTCCCTCCCCCCT
CCTCCCCCCTTTTCCTCCTTTCTTTTCCTCCCCTCCCTCTCCCTTCTCTC
CTTTCCCTCCTCCCCTTTTTCTCCTCCCCTCCCTCCCCCCCCTTCATTTT
CCCTCCTTCCCCTCCCTCTCCCCTCTCTCTTCCCCCTCCTCTCTCCCCCT
TCGTTTTCCTCTTTCTCTTTCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCCCTACCCGTTTTTGCGATATGATCTTG
TTATGTAGCCCAAGCTAGCCTGGAACATAAGATACATCTGCTTTAGCTTG
CAGAGTGCCCTGATCACATGAGCATACCAACACACATGGCTCACTTAGTT
CTTATGCCTGGTTCAGAATCTTGGAAGCAGTTGGGAAAGGAAGGTCTTTT
ATGAAGCAAGAGCAAGAAGGGGTTGTAACACACGTTAATACAGTGCTAAT
AGTTTCCCTAAGGTCAAGGTCATTCATTTGGTCAGGAGAATCACCCGAGA
ATGTTGAAAGCTAATGGCCAAAAGTTTCAGGGCAACATGGGGCTGAAGTA
TTGGTGCTGCTAAGCAAGTGATAAGACTGTGGGGCTGGGGGGAGATTCTG
CAGTGAAGGGAATGAATGTTACCTATGAACAACTTAAAAGTTGTCATGGG
GGTGTCTACGGGTGTCTACGGCATTGCTGACACTGTTCTTTGGCATGAAC
AAAGAATGGGATGACTTGCGAATATGGAAAATCATGCCGCCCAGTGAAAA
AGTAAGGTGAAGACTAAACGCCAGTAAACTTCCCGCACACCTGGCTTGGC
GATGTTCTACGCCCCCCCGCCAAATCCCTTTTCCCCAATTATATTCCCAA
AACACCCGCCCCGCCGCCTCTTTTTTTTCTTTTCCTCCCCGACGTTTCTC
CCTGGTTACATAAACCCCTCTTCTCCAGATTTCCCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_n05.g1 MSMg01no362_n05.g1 CHROMAT_FILE:
MSMg01no362_n05.g1 PHD_FILE: MSMg01no362_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:20 2005
         (441 letters)



>mm_chr13_30120419_30121259
          Length = 841

 Score =  791 bits (409), Expect = 0.0
 Identities = 433/441 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccctacccgtttttgcgatatgatcttgttatgtagcccaagctagcctggaacataa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 atccctacccgtttttgcgatatgatcttgttatgtagcccaagctagcctggaacgtaa 260

                                                                       
Query: 61  gatacatctgctttagcttgcagagtgccctgatcacatgagcataccaacacacatggc 120
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gatacatctgctttagtttgcagagtgccctgatcacattagcataccaacacacatggc 320

                                                                       
Query: 121 tcacttagttcttatgcctggttcagaatcttggaagcagttgggaaaggaaggtctttt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tcacttagttcttatgcctggttcagaatcttggaagcagttggaaaaggaaggtctttt 380

                                                                       
Query: 181 atgaagcaagagcaagaaggggttgtaacacacgttaatacagtgctaatagtttcccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaagcaagagcaagaaggggttgtaacacacgttaatacagtgctaatagtttcccta 440

                                                                       
Query: 241 aggtcaaggtcattcatttggtcaggagaatcacccgagaatgttgaaagctaatggcca 300
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aggtcaaggttattcatttggtcaggagaatcacctgagaatgttgaaagctaatggcca 500

                                                                       
Query: 301 aaagtttcagggcaacatggggctgaagtattggtgctgctaagcaagtgataagactgt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 aaagtttcagggcaacatggggctgaagtattggtgctgctaagcaagtgatgagactgt 560

                                                                       
Query: 361 ggggctggggggagattctgcagtgaagggaatgaatgttacctatgaacaacttaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 ggggctggggggagattctgcagtgaagggaatgaatgttacctatgaacatcttaaaag 620

                                
Query: 421 ttgtcatgggggtgtctacgg 441
           |||||||||||||||||||||
Sbjct: 621 ttgtcatgggggtgtctacgg 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)