BAC Information

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BAC

Clone NameMSMg01-363C24
Chromosome13 (Build37)
Map Location 45,779,760 - 45,780,283
singlet/doubletsinglet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363C24.T7 (MSMg01no363_c24.b1)MSMg01-363C24.TJ (MSMg01no363_c24.g1)
ACCAG471686AG471687
length1,503762
length of high quality
(start - end)
---524 (77 - 600)
definitionCHROMAT_FILE: MSMg01no363_c24.b1 PHD_FILE: MSMg01no363_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:49 2005CHROMAT_FILE: MSMg01no363_c24.g1 PHD_FILE: MSMg01no363_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCCATATCCCGTCCGCTCTAATATACGCGCCGTTTATCTTCGCTTTTAT
CGCTAGAGCGAATAGTGCATGGCCATACCATATCTTCCTAGCGCGACTGT
CACTGCCGTTGCACGTGTGAGNCATGTGAAATAGTATAACGGAGGGGGGC
ATATCGATGGTGGATAGCGATATGAGCTGAGTGCGGATCTTGACGATGAA
GTCATATTATAAACTTACACACACACATGTCTCGCCTATTCGCCGTAGCT
AGTTCCGACGCTGTGCCGCATGTAGCCTAAGCGACTGCGGGATAGAGGAC
TGAAACATTTTACAGTGCATTCGATCTCGTCTCGTGCGAATATTTGTAAA
ATAGAGGGTCGTCTGTCGCGACTTTTATATATGCTGTAGCGCATTATGCA
CACCACTTCNAGCTACTTGGCGCTCTTGTAGCTGTTGTCCAGTTCATCGC
TTGTACTGCGATCTAATCGTAGTGGAGCGCACAGCTCGTGTGCCGCTTGT
TGTCGTTTGACCAATGAGCACGACCTGTTGTTATAGCCTAGGCTAGGAGC
GCTGATCTTATCTCATGCTCTGACCACGTGTTATAACGAGATATCCCATC
TATGATCGCGATATTGGCGCGCTCACAAGCGCTCCACGATTTGAGTTATG
CGAATCTGTTCTTGTGTATAATACACCGAGTTCACGTCTCATGTATCCAG
CTCCGTACTATGCATCACGTGCTGCAGACTGGGCGTGCGGTGCCCAGTGC
CATATATTGTGTATAGTGAAGCAAACAGCGTGCTCGTTCATATGTGACTT
TACGAGTGACCTCCGCGCGTCGTATATGTGCTCCAACGAGATGTTGTGTC
GTACTCCTTGACTCGATCGACACTTGTCATCTCTGTGGTATACTGACACC
TCTCCTATACTACATCGCTCTCGCTCTCTCTCACGGTCATCGTCGGCCAC
GCTTCTACTCGTGTCTATGCTTCTTCGTCTCTCTACTACCGACTAAATTG
CGCATGCGTACTATTTCATAGACCCCCACAGATTATTATACGCACTTGCG
GACAGATCTCCGGCCGCTGAGAGGTCTACGCGGATTTGTTATATATCCTC
GCGTCCGTACAGCCACATCTAGTATTCGTCTCTTCACCATGCCGTCGCTG
TCCCGCCTCCGAATATATTTCTTTAACGTGTGTGTACCGTCGCTGTATCG
ACGCACGTATGGCGATCGCCACANATGCAGNAGTCATGACCGCCTCTATA
CCGCTTCTGCGCTAGACACGTGATTGTATTACTCACTCGGATTGTACGGC
TCTCGCACTCACTAGATCGCTCATATGTGATCACCACGTCGAGATTATTA
GCGNAGTAGTCCTGTATGGGCGGGTAATATATATCATGCGCGATCTATAT
CACACGCGACTAACGTAGTACATTAGTGCTCGCGATCATATATCAATCGT
AACGATATTGACACGTGTACGTACAATATGTGTGCTGTAGCTGGATAGCG
TCN
NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCCAAAATACACTGTTGTCATACCCAGAGAATGTG
CATCAGAAAGGTGAGAGATCCACATGCTCTCAATAGATCCTCATGCCTAT
CTTCCTTTGTAAGACACAGGCAATACTCAATGGGCATTCATCGATCTCAC
GCCGGTCTGTCAAATTACAATGACTGCCCCATACACTAATCAAGGAGGCC
ATCAAGAGTGGCTCTGCACACAGACTCACTCTTTCAGACTTAAAAATATG
TCACCTTCCAAGGAAGCAAGCGCCAGGAGGTACATAGTAGGGTCCCAGAA
CTAAAGGAAGCAGACTGGATGGGCAAGTGAAGACTACGAGCTAGCTCAGT
GTAACAACACACAGGCAGCAGACTCCATTCGCTGGCCCCATCTTCCAATA
ACAAGATCCCATGTCCCTCTGCACTGATCCATGCCCTCTGGAACAGCGTG
TCCAGTCACTAACATCATATGTGAAGTGTCACACAAGGTTACATGTTTAA
ACAGCGACAGGAAGCACAAAGGTGGCAGTTTCTCCACTCCCCTCCAGTGC
CAAGCTCCTTTATTCCCCCTGGCCCTGGTTCCACACGCTGTTCTGAGTGT
CATAAGAGAGTGAGGGTGACAAAACCTTTCTTCCTTTTTGTATAGAGGGC
AATTGATCATTGCTTATTGATCGGGCCCGTTATTATAGCCTAATTTCACT
ATTCCGCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_c24.g1 MSMg01no363_c24.g1 CHROMAT_FILE:
MSMg01no363_c24.g1 PHD_FILE: MSMg01no363_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:49 2005
         (524 letters)



>mm_chr13_45779560_45780483
          Length = 924

 Score = 1006 bits (520), Expect = 0.0
 Identities = 523/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttgtcatacccagagaatgtgcatcagaaaggtgagagatccacatgctctcaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttgtcatacccagagaatgtgcatcagaaaggtgagagatccacatgctctcaatag 260

                                                                       
Query: 61  atcctcatgcctatcttcctttgtaagacacaggcaatactcaatgggcattcatcgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctcatgcctatcttcctttgtaagacacaggcaatactcaatgggcattcatcgatc 320

                                                                       
Query: 121 tcacgccggtctgtcaaattacaatgactgccccatacactaatcaaggaggccatcaag 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacgccggtctgtcaaattacgatgactgccccatacactaatcaaggaggccatcaag 380

                                                                       
Query: 181 agtggctctgcacacagactcactctttcagacttaaaaatatgtcaccttccaaggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggctctgcacacagactcactctttcagacttaaaaatatgtcaccttccaaggaag 440

                                                                       
Query: 241 caagcgccaggaggtacatagtagggtcccagaactaaaggaagcagactggatgggcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagcgccaggaggtacatagtagggtcccagaactaaaggaagcagactggatgggcaa 500

                                                                       
Query: 301 gtgaagactacgagctagctcagtgtaacaacacacaggcagcagactccattcgctggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgaagactacgagctagctcagtgtaacaacacacaggcagcagactccattcgctggc 560

                                                                       
Query: 361 cccatcttccaataacaagatcccatgtccctctgcactgatccatgccctctggaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccatcttccaataacaagatcccatgtccctctgcactgatccatgccctctggaacag 620

                                                                       
Query: 421 cgtgtccagtcactaacatcatatgtgaagtgtcacacaaggttacatgtttaaacagcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgtgtccagtcactaacatcatatgtgaagtgtcacacaaggttacatgtttaaacagcg 680

                                                       
Query: 481 acaggaagcacaaaggtggcagtttctccactcccctccagtgc 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaggaagcacaaaggtggcagtttctccactcccctccagtgc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)