BAC Information

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BAC

Clone NameMSMg01-364A06
Chromosome13 (Build37)
Map Location 18,622,120 - 18,808,203
singlet/doubletdoublet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364A06.T7 (MSMg01no364_a06.b1)MSMg01-364A06.TJ (MSMg01no364_a06.g1)
ACCAG472314AG472315
length770771
length of high quality
(start - end)		519 (47 - 565)449 (74 - 522)
definitionCHROMAT_FILE: MSMg01no364_a06.b1 PHD_FILE: MSMg01no364_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:57 2005CHROMAT_FILE: MSMg01no364_a06.g1 PHD_FILE: MSMg01no364_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,622,120 - 18,622,634)(18,807,755 - 18,808,203)
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATAAAATAGTTAAATTCTACTTTTAGAATGAGTGAGTGTTCAG
CATGCAAGTTATAGTGTAATAATAATTTCACTAAAGATATTTTTAATGAA
AGCAAAAATATTTTAGTTCCATAACTGAAAACATGGCAATAATGGAAAAA
CAGCCCATAGCAAGTAAACAGGAAATGGTAAATTCCAAAATGTCTACCAA
TGGCAGCGACCCTAGAAATCTCGACAGGAACAGTACCAAGACTATCTAAC
TGTGCCTAAAAATGTTCTCCTTCCATATCTATAGGATGGTCAAAAGCGGG
GGTGCCATGGCTTCATGTCTAGGACTCCTTAAAGTAGTGTAGCATTTAAA
GATGCACTGGGCATTTCTCCTTTGATGTCTGCACAGTGGCTTCAGGAGCT
GACCAAGGTGCTGATAGTTGACCAACTCAAGCAATAGACAGAGGTCATGA
ATTCATGTTATTGCTGTGAGGAACTGAAACTGAGGAGAGCATACTAGATC
CAACTACAGAGTTGACAGCCTTTCAATATTCAAGCAATGTAATTGAAGTT
ACAATTAGTCATTATCCACAAGGTCATGTCCTCCTGTGNCAACCTGTCTT
TACATGAAGAAAGTCTACAGTAGTTGAAGACTCTCAAAGGAGTTAAACCA
CTACCCCAGAAATCCCATTTTACATCTTAAAAACTGGAGAAAATTTGCCA
AAAGGGTTTTCACTTAAAAA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCATCTTATCCACTGATAGCCATTG
TCTGTTTATTGTCTTAAGCAGCTGGCAACTCACAGAGGGCAGCACAGTTG
GCAGACTGTGGCAGATGCCTCAGTGCCCTTTCGTTCCCTGTAATTCCCAC
TGACAGTAGCCTAATAGGAAGTCATATTCTTAGTACTCAGCATTTCCCTT
AGTCTCTAGATGTTGCTTTCTCAACTCACGGTCTTCAGTGACCTGGAAGC
CATGACGATGTCATCTTTCAGACTCTTGTCTTCTCCCAAGAGCCTTAATA
AACCTCCAGCTCTTCCTGAGGCCCCTCTTCCAGGCTGCGCACCAAGCAGC
TAATTTGGACACCCACAACCAAGGGTCCAAGGTCATGTCTGATCGAACAG
AATTTTATATATGTTATTAAGCCACTCAGGCCCAAACAGCACTCATGGTG
GACTTCAAGCTACTGAAAGACCTTGTTGTGAGAATTTTTTTTAACTGGCA
GGTGCCTAGACAATCTATCTCCTTCTTTCTAAGGTACCAATAACAAACCA
AACTTCAAACCCATCAAGCTCCCCTGGGGAACCAATGAGCTTATTGAGTT
TACAGAGCATGGGTGAAGGGCTACTGCCTGGAAGACAAGTGGCCCCAAAT
GAACCCCAATGGAAGGTTTTTCCCCCCCTGGGCGAAAAATTCTACCTACC
CCAACTGGGGGTTTTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_a06.b1 MSMg01no364_a06.b1 CHROMAT_FILE:
MSMg01no364_a06.b1 PHD_FILE: MSMg01no364_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:57 2005
         (519 letters)



>mm_chr13_18621916_18622834
          Length = 919

 Score =  973 bits (503), Expect = 0.0
 Identities = 512/515 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataaaatagttaaattctacttttagaatgagtgagtgttcagcatgcaagtt 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcaataaaatagttaaattctacttttagaatgagtgaatgttcagcatgcaagtt 264

                                                                       
Query: 65  atagtgtaataataatttcactaaagatatttttaatgaaagcaaaaatattttagttcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagtgtaataataatttcactaaagatatttttaatgaaagcaaaaatattttagttcc 324

                                                                       
Query: 125 ataactgaaaacatggcaataatggaaaaacagcccatagcaagtaaacaggaaatggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataactgaaaacatggcaataatggaaaaacagcccatagcaagtaaacaggaaatggta 384

                                                                       
Query: 185 aattccaaaatgtctaccaatggcagcgaccctagaaatctcgacaggaacagtaccaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattccaaaatgtctaccaatggcagcgaccctagaaatctcgacaggaacagtaccaag 444

                                                                       
Query: 245 actatctaactgtgcctaaaaatgttctccttccatatctataggatggtcaaaagcggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actatctaactgtgcctaaaaatgttctccttccatatctataggatggtcaaaagcggg 504

                                                                       
Query: 305 ggtgccatggcttcatgtctaggactccttaaagtagtgtagcatttaaagatgcactgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtgccatggcttcatgtctaggactccttaaagtagtgtagcatttaaagatgcactgg 564

                                                                       
Query: 365 gcatttctcctttgatgtctgcacagtggcttcaggagctgaccaaggtgctgatagttg 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcatttctcctctgatgtctgcacagtggcttcaggagctgaccaaggtgctgatagttg 624

                                                                       
Query: 425 accaactcaagcaatagacagaggtcatgaattcatgttattgctgtgaggaactgaaac 484
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 accaactcaagcaatagacagaggacatgaattcatgttattgctgtgaggaactgaaac 684

                                              
Query: 485 tgaggagagcatactagatccaactacagagttga 519
           |||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaggagagcatactagatccaactacagagttga 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_a06.g1 MSMg01no364_a06.g1 CHROMAT_FILE:
MSMg01no364_a06.g1 PHD_FILE: MSMg01no364_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:57 2005
         (449 letters)



>mm_chr13_18807555_18808403
          Length = 849

 Score =  837 bits (433), Expect = 0.0
 Identities = 445/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcatcttatccactgatagccattgtctgtttattgtcttaagcagctggcaactcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 actcatcttatccactgatagccattgtctgtttattgtcttaagcagctggcaactcac 590

                                                                       
Query: 61  agagggcagcacagttggcagactgtggcagatgcctcagtgccctttcgttccctgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agagggcagcacagttggcagactgtggcagatgcctcagtgccctttcgttccctgtaa 530

                                                                       
Query: 121 ttcccactgacagtagcctaataggaagtcatattcttagtactcagcatttcccttagt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttcccactgacagtagcctagtaggaagtcatattcttagtactcagcatttcccttagt 470

                                                                       
Query: 181 ctctagatgttgctttctcaactcacggtcttcagtgacctggaagccatgacgatgtca 240
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 469 ctctagatgttgctttctcaactcatggtcttcaatgacctggaagccatgacgatgtca 410

                                                                       
Query: 241 tctttcagactcttgtcttctcccaagagccttaataaacctccagctcttcctgaggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tctttcagactcttgtcttctcccaagagccttaataaacctccagctcttcctgaggcc 350

                                                                       
Query: 301 cctcttccaggctgcgcaccaagcagctaatttggacacccacaaccaagggtccaaggt 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cctcttccagtctgcgcaccaagcagctaatttggacacccacaaccaagggtccaaggt 290

                                                                       
Query: 361 catgtctgatcgaacagaattttatatatgttattaagccactcaggcccaaacagcact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 catgtctgatcgaacagaattttatatatgttattaagccactcaggcccaaacagcact 230

                                        
Query: 421 catggtggacttcaagctactgaaagacc 449
           |||||||||||||||||||||||||||||
Sbjct: 229 catggtggacttcaagctactgaaagacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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