Query= MSMg01no365_i15.b1 MSMg01no365_i15.b1 CHROMAT_FILE:
MSMg01no365_i15.b1 PHD_FILE: MSMg01no365_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:04 2005
(340 letters)
>mm_chr13_52829694_52830433
Length = 740
Score = 578 bits (299), Expect = e-169
Identities = 311/315 (98%)
Strand = Plus / Minus
Query: 1 atgcctgtggcctgcagcgctcatgctgaagacctgagaagcagctctctcagagggggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atgcctgtggcctgcagcgctcatgctgaagacctgagaagcagctctctcagagggggt 256
Query: 61 ggctcctgtggaaaagctccatggagggagagcagacaggtcttaaggctgactgggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggctcctgtggaaaagctccatggagggagagcagacaggtcttaaggctgactgggagc 196
Query: 121 tagaggtggctcaaccggtaagtgtgctttcccttccagcatgaggctctgagttcaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tagaggtggctcaaccggtaagtgtgctttcccttccagcatgaggctctgagttcaagt 136
Query: 181 cctcggcatgcatgtcagagccaggtttaactccagagctgtgaagggtggaaacaggag 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ccttggcatgcatgtcagagccaggtttaactccagagctgtgaagggtggaaacaggag 76
Query: 241 gatctctggttttggctgactgaccctagctccctgtttacttgaagacaatattgtagc 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gatctctggggctggctgactgaccctagctccctgtttacttgaagacaatattgtagc 16
Query: 301 gaatgatgaggtagg 315
|||||||||||||||
Sbjct: 15 gaatgatgaggtagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_i15.g1 MSMg01no365_i15.g1 CHROMAT_FILE:
MSMg01no365_i15.g1 PHD_FILE: MSMg01no365_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:04 2005
(513 letters)
>mm_chr13_52672167_52673078
Length = 912
Score = 866 bits (448), Expect = 0.0
Identities = 498/518 (96%), Gaps = 11/518 (2%)
Strand = Plus / Plus
Query: 1 aaccagtcctgggcaagaggcaggaggcaggaagcagagcgagagcctgtgtggtcgtgc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aaccagtcctgggcaagaggcaggaggcaggaagcagagcgcgagcctgtgtggtcgtgc 260
Query: 61 cattccccgcagatggtgacacagaccaccctgaaacttgagacgactgtctcg-tttca 119
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 261 cattccccgcagatggtgacacagaccaccctgaaacttgagacgactgtc-cggtttca 319
Query: 120 taggtggggccactggtcggaacaaataagggaattagaaatgggaatacagtaagaggg 179
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 320 taggtggg-ccactggtcggaacaaataaaggaattagaaatgggaatacagtaagaggg 378
Query: 180 agagggagagggctggctgcccaggagatggtgttctttttttggacaaaggaaaaaa-t 238
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 379 agagggagagggctggctgcccaggagagggtgttctttttttggacaaaggaaaaaaat 438
Query: 239 tgatttttct---agagacaaaggaagtaaggacccagaaggggtgacaagcaggcattt 295
||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgag----cacacagagacaaaggaagtaaggacccagaaggggtgacaagcaggcattt 494
Query: 296 gctgaagccgggagcacccttccagcaagtatgatccccagaactggcagaccagagacc 355
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 495 gctgaagccgggagcacccttccagcaagtatgatccccagaactggcagagcagtgacc 554
Query: 356 tgtggtatgggctgatcttttacagggctctctacttcagtctcttgtgacccctctttc 415
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtggtctgggctgatcttttacagggctctctacttcagtctcttgtgacccctctttc 614
Query: 416 tttcccgcttcctcctgcttctctcccattcagtcatcccttcctttggacagtccttgg 475
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tttcccgcttccccctgcttctctcccattcagtcatcccttcctttggacagtccttgg 674
Query: 476 cccaggaagataaccacagtgagtaaggaggcacccaa 513
||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cccaggaagataaccacagtgagtaaggaggcacccaa 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space: 453706
Effective search space used: 453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
